View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_50 (Length: 300)
Name: NF21165_low_50
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 42527929 - 42527659
Alignment:
| Q |
19 |
actgccacaacacgtcctgcagctaactttttctcttgaatagaccttgacattatgttaatcaatttactttctcaatattgatgaaacccctattgg- |
117 |
Q |
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| T |
42527929 |
actgccacaacacgtcctgcagctaactttttctcttgaatagaccttgacattatgttaatcaatttactttctcaatattgatgaaacccctattggt |
42527830 |
T |
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| Q |
118 |
tttattattaccttcaattgaatgaatgaatgaatttgtaaaatcaactagaagcaatttcaatttattgtgnnnnnnnnagtgtactagctagagacag |
217 |
Q |
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| T |
42527829 |
tttattattaccttcaat----tgaatgaatgaatttgtaaaatcaactagaagcaatttcaatttattgtgttttttttagtgtactagctagagacag |
42527734 |
T |
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| Q |
218 |
aatatgttttgaagaaggaattgacaacaaatgtaagtgtaactaatacgcggtcgtaactattttaagaattat |
292 |
Q |
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| T |
42527733 |
aatatgttttgaagaaggaattgacaacaaatgtaagtgtaactaatacgcggtcgtaactattttaagaattat |
42527659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 42519756 - 42519631
Alignment:
| Q |
19 |
actgccacaacacgtcctgcagctaactttttctcttgaatagaccttgacattatgttaatcaatttactttctcaatattgatgaaacccctattgg- |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519756 |
actgccacaacacgtcctgcagctaactttttctcttgaatagaccttgacattatgttaatcaatttactttctcaatattgatgaaacccctattggt |
42519657 |
T |
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| Q |
118 |
tttattattaccttcaattgaatgaa |
143 |
Q |
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| T |
42519656 |
tttattattaccttcaattgaatgaa |
42519631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 42519563 - 42519445
Alignment:
| Q |
138 |
aatgaatgaatgaatttgtaaaatcaactagaagcaatttcaatttattgtgnnnnnnnnagtgtactagctagagacagaatatgttttgaagaaggaa |
237 |
Q |
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||||||||||||||||||| |||||| ||||||| |||||| ||||||||| |||||||||||||||||||||| || | ||||||||||| |
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| T |
42519563 |
aatgaatgaatgaatttgtgaaatcagctagaagaaatttctatttattgtattttttttagtgtactagctagagacagaacat--tatgaagaaggaa |
42519466 |
T |
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| Q |
238 |
ttgacaacaaatgtaagtgta |
258 |
Q |
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||||||||||||||||||||| |
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| T |
42519465 |
ttgacaacaaatgtaagtgta |
42519445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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