View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_54 (Length: 283)
Name: NF21165_low_54
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 28021041 - 28021312
Alignment:
| Q |
1 |
gcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatttgaggtcatttataacnnnnnnnncggctc |
100 |
Q |
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| T |
28021041 |
gcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatttgaggtcatttataacaaagaaaacggctc |
28021140 |
T |
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| Q |
101 |
catttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaagcttgttttcgctaaaactagcattttccta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28021141 |
catttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgagaagcttgttttcgctaaaactagcattttccta |
28021240 |
T |
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| Q |
201 |
ttataaattttaatgaaaattttaaaattatatgttcgctcgcgcaacatgcaattccgaatctagtttctt |
272 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
28021241 |
ttataaattttaatgaaaattttaaaattatacgttcgctcgcgcaacatgcaattctgaatctagtttctt |
28021312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 29348075 - 29348158
Alignment:
| Q |
96 |
ggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaagcttgttttcg |
180 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |||||| ||| | |||||||||||||||||| |
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| T |
29348075 |
ggctccatttattataattggcagttaccacaattcaagg-gttgttttataaaggtcgtaaaaatctcgggaagcttgttttcg |
29348158 |
T |
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