View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_58 (Length: 266)
Name: NF21165_low_58
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_58 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3873832 - 3874092
Alignment:
| Q |
1 |
gggatatataagagaatgagaaaaataaaaggtgacatgggttagttaaatttgacccttttgcccaaaggggaaaaagcttatataaagnnnnnnnnac |
100 |
Q |
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| T |
3873832 |
gggatatataagagaatgagaaaaataaaaggtgacatgggttagttaaatttgacccttttgcccaaaggggaaaaagcttatataaggttttttttac |
3873931 |
T |
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| Q |
101 |
aaagggaaaaagctcatatatggtttaattatttttatcttttgtaaaaggaaaatgtannnnnnnnnnnnnnngagagaacaaggaaaatgttttgttt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
3873932 |
aaagggaaaaagcttatatatggtttaattatttttattatttgtaaaaggaaaatgt-----tttttttttttgagagaaaaaggaaaatgttttgttt |
3874026 |
T |
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| Q |
201 |
acccataaagcttgattcagcggtaaaaaataaattatagattggtgttaaatttgagctccgttt |
266 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3874027 |
acccataaagcttgattcagtggtaaaaaataaattatagatttgtgttaaatttgagctccgttt |
3874092 |
T |
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