View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_6 (Length: 631)
Name: NF21165_low_6
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 300 - 616
Target Start/End: Original strand, 14599032 - 14599348
Alignment:
| Q |
300 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
399 |
Q |
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| T |
14599032 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
14599131 |
T |
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| Q |
400 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14599132 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttt |
14599231 |
T |
|
| Q |
500 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctactttgtatggctccttacatccaggacac |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14599232 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctactttgaatggctccttacatccgggacac |
14599331 |
T |
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| Q |
600 |
gtgccggtttctttctg |
616 |
Q |
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||||||||||||||||| |
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| T |
14599332 |
gtgccggtttctttctg |
14599348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 14598740 - 14598862
Alignment:
| Q |
8 |
cgaacaatatctcacaggtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaa |
107 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14598740 |
cgaaccatatctcacaagtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactaccaa |
14598839 |
T |
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| Q |
108 |
gcgaatagcaataagagccctgt |
130 |
Q |
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| T |
14598840 |
gcgaatagcaataagagccctgt |
14598862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 304 - 496
Target Start/End: Complemental strand, 14609478 - 14609286
Alignment:
| Q |
304 |
ttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcatctga |
403 |
Q |
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|||||||||||||||||| || | || ||| |||||||||||||| || ||||| ||| |||||||||||||| || | |||| | | ||| | |
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| T |
14609478 |
ttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttc |
14609379 |
T |
|
| Q |
404 |
atcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
496 |
Q |
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| T |
14609378 |
atcgtctggaggccaatatgcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
14609286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14609736 - 14609622
Alignment:
| Q |
8 |
cgaacaatatctcacaggtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaa |
107 |
Q |
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||||| |||||||||| ||||||||||| | ||| ||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
14609736 |
cgaaccatatctcacaagtaattgacataacccacaaccatactgcctctttatttggatgtgtcactctccaatgtaaaaagaagcacattactactaa |
14609637 |
T |
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| Q |
108 |
gcgaatagcaataag |
122 |
Q |
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||||| | ||||||| |
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| T |
14609636 |
gcgaacaccaataag |
14609622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 15420556 - 15420619
Alignment:
| Q |
415 |
gccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaa |
478 |
Q |
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||||| ||||||| |||| ||||||||| ||||| ||||||||||||||| |||| |||||||| |
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| T |
15420556 |
gccaaaaagcatttccaattccataggttcctttagtctcaaacaaccatctattatgatcaaa |
15420619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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