View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_63 (Length: 250)
Name: NF21165_low_63
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_63 |
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| [»] chr3 (12 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 27996123 - 27995901
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtg |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
27996123 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgatacacaagttatgaaaaaatcatcatgcagaaaagtg |
27996024 |
T |
|
| Q |
112 |
gactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacctatatgttgttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| || ||| |
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| T |
27996023 |
gactgaagaccgaaaatggaaatcatataccgatagaaaatctgag-------------aaaaaataccattagattgttttctacctata---tgctat |
27995940 |
T |
|
| Q |
212 |
tactgttgtcagcacatgattttgaacaatcttttcctt |
250 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||| |
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| T |
27995939 |
tactgttgtcagctcataattttgaacaatcttttcctt |
27995901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 28099940 - 28099774
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtg |
111 |
Q |
| |
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||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| | | |||||||||||||||| |
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| T |
28099940 |
caatactaaagtttaatatcctttaagccgatctctaaatacctaatttatctttgaaaatgataaacaatttatgaaacatttatcatgtagaaaagtg |
28099841 |
T |
|
| Q |
112 |
gactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaata |
178 |
Q |
| |
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|| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |
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| T |
28099840 |
gagtgaagaccgaaaatggaaatcatacaccgatagaaaatctgagaaaataaaagaagaaaaaata |
28099774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 28474876 - 28475064
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatg-aaaaaatcatcatgtagaaaagt |
110 |
Q |
| |
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||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
28474876 |
caatattgaagtttaagatcctttaagtcaatctctaaatacccaatttatatttgaaaacgataaacaagttatgaaaaaaatgatcatgtagaaaagt |
28474975 |
T |
|
| Q |
111 |
ggactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacct |
199 |
Q |
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|| | |||||| ||| ||||||||||||||| ||| |||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
28474976 |
agagttaagaccaaaattggaaatcatataccaataaaaaatctgagaaagtaacaaaagaaaaacaaccatgagattgttttctacct |
28475064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 28515915 - 28516129
Alignment:
| Q |
32 |
ctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtggactgaagaccgaaaatgga |
131 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||| || |||||||||||| |||| |
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| T |
28515915 |
ctttaagtcaatctctaaatacccaatttatctttgaatgcggtaaacaagttatgaaaaaaaaatcatgtagaaaagttgagtgaagaccgaaattgga |
28516014 |
T |
|
| Q |
132 |
aatcatataccgataggaaatctgagaaa--ataacagaagaaaaaataccatgagattgttttctacctatatgttgttattactgttgtcagcacatg |
229 |
Q |
| |
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||||||||||| |||| ||||| |||||| | || | |||||||| ||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
28516015 |
aatcatataccaatagaaaatcggagaaagtaaaaaaaaagaaaaacaaccatgagattgttttctacctaaatggtg---ttactgttgtcagcacata |
28516111 |
T |
|
| Q |
230 |
attttgaacaatcttttc |
247 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
28516112 |
ctttttaacaatcttttc |
28516129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 28127443 - 28127256
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtg |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| | ||||||||||||| |
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|
| T |
28127443 |
caatattaaagtttaagatcctttaagccaatctctgaatacccaatttatctttgaaaatgataaacaagtcatgaaaaaaggaccatgtagaaaagta |
28127344 |
T |
|
| Q |
112 |
gactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacct |
199 |
Q |
| |
|
|| |||||||| ||| |||||||||||||| |||| ||||||||| || | | | |||||||| ||||||||||| |||||||||| |
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| T |
28127343 |
gagtgaagaccaaaattggaaatcatatacaaatagaaaatctgaggaagtgataaaagaaaaacaaccatgagattattttctacct |
28127256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 28141374 - 28141187
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtg |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| | ||||||||||||| |
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|
| T |
28141374 |
caatattaaagtttaagatcctttaagccaatctctgaatacccaatttatctttgaaaatgataaacaagtcatgaaaaaaggaccatgtagaaaagta |
28141275 |
T |
|
| Q |
112 |
gactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacct |
199 |
Q |
| |
|
|| |||||||| ||| |||||||||||||| |||| ||||||||| || | | | |||||||| ||||||||||| |||||||||| |
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| T |
28141274 |
gagtgaagaccaaaattggaaatcatatacaaatagaaaatctgaggaagtgataaaagaaaaacaaccatgagattattttctacct |
28141187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 8540525 - 8540670
Alignment:
| Q |
14 |
atattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtgga |
113 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||| || |
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| T |
8540525 |
atattaaagtttaagatcctttaagcaaatctctaaatacctaatttatctttgaaaacaataaacaagttatgaaaaagtgatcatgtagaagagtaga |
8540624 |
T |
|
| Q |
114 |
ctgaagaccgaaaatggaaatcatataccgataggaaatctgagaa |
159 |
Q |
| |
|
|| |||| ||| ||||||||||||||| |||| ||||||||||| |
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|
| T |
8540625 |
gtggagactaaaattggaaatcatataccaatagaaaatctgagaa |
8540670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 27960559 - 27960458
Alignment:
| Q |
102 |
tagaaaagtggactgaagaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacctat |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| | ||||||||||||||||| |||||||||| |
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| T |
27960559 |
tagaaaagtggagtgaagaccgaaaatggaaatcatataccaatagaaaatctgagaatataacagaag-agaaataccatgagattgtattctacctat |
27960461 |
T |
|
| Q |
202 |
atg |
204 |
Q |
| |
|
||| |
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|
| T |
27960460 |
atg |
27960458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 28500386 - 28500529
Alignment:
| Q |
34 |
ttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatcatgtagaaaagtggactgaagaccgaaaatggaa- |
132 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||| ||| ||||| |
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|
| T |
28500386 |
ttaagtcaatctctaattacccaatttatctttgaaaacggtaaacaagttatgaaaaaatgatcatgtagaaaagtagagtgaagacc-aaattggaaa |
28500484 |
T |
|
| Q |
133 |
--atcatataccgataggaaatctgagaaaataacagaagaaaaa |
175 |
Q |
| |
|
|||||||||| |||| |||| ||||||| ||| | |||||||| |
|
|
| T |
28500485 |
tcatcatataccaatagaaaatgtgagaaagtaataaaagaaaaa |
28500529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 11406269 - 11406182
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatca |
99 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
11406269 |
caatattaaagtttaagatcctttaagacaatctctaaatacccaatttatctttgaaaacgataaacaggttgtgaaaaaatgatca |
11406182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 28044456 - 28044350
Alignment:
| Q |
118 |
agaccgaaaatggaaatcatataccgataggaaatctgagaaaataacagaagaaaaaataccatgagattgttttctacctatatgttgttattactgt |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
28044456 |
agaccgaaaatggaaatcatatacaaatagaaaatctgagaaagtaacaaaagaaaaacaagcatgagattgttttctacctcaatgtt----ttactgt |
28044361 |
T |
|
| Q |
218 |
tgtcagcacat |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
28044360 |
tgtcagcacat |
28044350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 27466857 - 27466937
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaa |
92 |
Q |
| |
|
||||||| ||||| || |||||||| | || |||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27466857 |
caatatttaagtttaaaatcctttacgaagatttctaaatacccaatttatctttgaaaacaataaacaagttatgaaaaa |
27466937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 21440 - 21353
Alignment:
| Q |
12 |
caatattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatgaaaaaatcatca |
99 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
21440 |
caatattaaagtttaagatcctttaagacaatctctaaatacccaatttatctttgaaaacgataaacaggttgtgaaaaaatgatca |
21353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 8697099 - 8697227
Alignment:
| Q |
15 |
tattaaagttaaagatcctttaagccaatctctaaatacctaatttatctttgaaaacgataaacaagttatg-aaaaaatcatcatgtagaaaagtgga |
113 |
Q |
| |
|
|||||||||| ||||||||| ||| || ||||||| || ||| |||||||||||||||||||||||||||| ||||||| |||||||||| || | || |
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|
| T |
8697099 |
tattaaagtttaagatccttcaagatgatatctaaatgcccaatatatctttgaaaacgataaacaagttatgaaaaaaatgatcatgtagagaaataga |
8697198 |
T |
|
| Q |
114 |
ctgaagaccgaaaatggaaatcatatacc |
142 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
8697199 |
gtgaataatgaaaatggaaatcatatacc |
8697227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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