View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_64 (Length: 249)
Name: NF21165_low_64
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_64 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 2625947 - 2625711
Alignment:
| Q |
2 |
tgaagccaatctagcacatttgcctgacatagaagtgacagaaatgatgagattgattgcagttttgtaattgatctttctatcttcaaattctttgatt |
101 |
Q |
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| T |
2625947 |
tgaagccagtctagcacattttcctgacatagaagtgacagaaatgatgagattgattgcagttctgtaattgatctttctatcttcaaattctttgatt |
2625848 |
T |
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| Q |
102 |
cctacagtaccaaattatattgaaacaattgacgataccaaagagaactactaacttgcacaggggagaccagcctctagtgcaaagatcaatagcctca |
201 |
Q |
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| T |
2625847 |
cctacagtaccaaattatattgaaacaattgtcgatacctgagagaaccactaacttgcataggggagaccagcctctagtgcaaaggtcaatagcctca |
2625748 |
T |
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| Q |
202 |
tgaatggtattaaagttgcattgcatttcaagatatt |
238 |
Q |
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| T |
2625747 |
acaatggtattaaagttgcactgcatttcaaaatatt |
2625711 |
T |
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Target: scaffold0627 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 9102 - 8995
Alignment:
| Q |
32 |
agaagtgacagaaatgatgagattgattgcagttttgtaattgatctttctatcttcaaat--tctttgattcctacagtaccaaattatattgaaacaa |
129 |
Q |
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||||||| || ||||||| | |||||| ||||||||| | || ||||||| |||||||||| ||||||||||| ||||||||| || ||||||||||| |
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| T |
9102 |
agaagtgccataaatgataaaattgatagcagttttgaagttaatctttccatcttcaaatcttctttgattccggcagtaccaa-ttgtattgaaacaa |
9004 |
T |
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| Q |
130 |
ttgacgata |
138 |
Q |
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|||| |||| |
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| T |
9003 |
ttgatgata |
8995 |
T |
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