View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_65 (Length: 239)
Name: NF21165_low_65
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29237433 - 29237197
Alignment:
| Q |
1 |
atccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgttacaaggccttgaatgaccaccatgtccccc |
100 |
Q |
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| T |
29237433 |
atccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctcc |
29237334 |
T |
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| Q |
101 |
ttgaaggcactctcttgaagcctaacatggttatccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237333 |
ttgaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgca |
29237234 |
T |
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| Q |
201 |
gagaaccgtacctgctgcagtcccagctgttgttttc |
237 |
Q |
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| T |
29237233 |
gagaaccgtacctgctgcagtcccagctgttgttttc |
29237197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29233683 - 29233447
Alignment:
| Q |
1 |
atccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgttacaaggccttgaatgaccaccatgtccccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |
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| T |
29233683 |
atccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggcctagaatgaccaccatgtcctcc |
29233584 |
T |
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| Q |
101 |
ttgaaggcactctcttgaagcctaacatggttatccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgca |
200 |
Q |
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| T |
29233583 |
ttgaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgca |
29233484 |
T |
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| Q |
201 |
gagaaccgtacctgctgcagtcccagctgttgttttc |
237 |
Q |
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| T |
29233483 |
gagaaccgtacctgctgcagtcccagctgttgttttc |
29233447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 26629794 - 26629719
Alignment:
| Q |
58 |
cttgcagcatgttacaaggccttgaatgaccaccatgtcccccttgaaggcactctcttgaagcctaacatggtta |
133 |
Q |
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|||||||||||||||||||| | | |||||| ||||| | |||||||| ||||| ||||||||||| ||||||| |
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| T |
26629794 |
cttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaagcctaatatggtta |
26629719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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