View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_67 (Length: 237)
Name: NF21165_low_67
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_67 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 49778955 - 49779176
Alignment:
| Q |
16 |
aaaattgcatgtgtaactcctacgtttagctgttttcatagctgaaggccatccctagattagtttcgagagcttattattcagaacaattttatgcttc |
115 |
Q |
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| T |
49778955 |
aaaattgcatgtgtaactcctacgtttagctgttttcatagttgaaggccatccctagattagtttcgagagcttattattcagaacaattttatgcttc |
49779054 |
T |
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| Q |
116 |
ttcaaagtccttttaaagttttagaagttatatgagagagcttgtaaaaagctgagatacagaagctattttaacttacactagaattgtctaaattttg |
215 |
Q |
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| T |
49779055 |
ttcaaagtccttttaaagttttagaagttatatgagagagcttgtaaaaagctgagatacagaagctattttaacttacactagaattgtctaaattttg |
49779154 |
T |
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| Q |
216 |
tttacttattgcaatctttttc |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
49779155 |
tttacttattgcaatctttttc |
49779176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 7990356 - 7990142
Alignment:
| Q |
16 |
aaaattgcatgtgtaactcctacgtttagctgttttcatagctgaaggccatccctagattagtttcgagagcttattattcagaacaattttatgcttc |
115 |
Q |
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|||||||||| |||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
7990356 |
aaaattgcatatgtaacccctacatttagctgttttcatagttgaaggccatctctagattagttttgagagcttattattcagaacaattttatggttc |
7990257 |
T |
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| Q |
116 |
ttcaaagtccttttaaagttttagaagttatatgagagagcttgtaaaaagctgagatacagaagctattttaacttacactagaattgtctaaattttg |
215 |
Q |
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| T |
7990256 |
ttcaaagtccttttaaagttgtagaagttatacgagaaagcttctaaaaagctgagatacagaagctattttaacttacactagaattgtctaaattttg |
7990157 |
T |
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| Q |
216 |
tttacttattgcaat |
230 |
Q |
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| T |
7990156 |
tttacttattgcaat |
7990142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 31603131 - 31603205
Alignment:
| Q |
71 |
tagattagtttcgagagcttattattcagaacaattttatgcttcttcaaagtccttttaaagttttagaagtta |
145 |
Q |
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|||||||||||| ||||||| | |||| ||||| |||||| |||||||||||| || | ||||| ||||||||| |
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| T |
31603131 |
tagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagtta |
31603205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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