View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_69 (Length: 236)
Name: NF21165_low_69
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46667691 - 46667912
Alignment:
| Q |
1 |
aacttggtgtgaatgatgaggcaatagaagcacttctagacaaggtgttatgtttgtgannnnnnnnnnnnnnnnnncacaaatttcttagatagtatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46667691 |
aacttggtgtgaatgatgaggcaatagaagcacttctagacaaggtgttatgtttgtgattttttctctctttttttcacaaatttcttagatagtatta |
46667790 |
T |
|
| Q |
101 |
catttgaaagtccatacagttttgaagaaataaaatcgctcttaatagaagctgtactaaatgtaacctcttgnnnnnnncttctctataaattattatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46667791 |
catttgaaagtccatacagttttgaagaaataaaatcgctcttaatagaagctgtactaaatgtaacctcttgtttttttcttctctataaattattatc |
46667890 |
T |
|
| Q |
201 |
caattgaataaaataattaatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
46667891 |
caattgaataaaataattaatt |
46667912 |
T |
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