View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_70 (Length: 235)
Name: NF21165_low_70
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_70 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 6185125 - 6184927
Alignment:
| Q |
19 |
atcaaccaaagaaaattaggactagtgatgatagtgcaaatgagaagaagaaatcaacacttctattgcaagtagatggtgatgatgttcacaaggaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185125 |
atcaaccaaagaaaattaggactagtgatgatagtgcaaatgagaagaagaaatcaacacttctattgcaagtagatggtgatgatgttcacaaggaaca |
6185026 |
T |
|
| Q |
119 |
tgaattagagaaagcaacatttcctacaagatcaatctaccgaagaagtaaatcttatagacacaatagagccaagcatgttgtgattgatgaaaggag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185025 |
tgaattagagaaagcaacatttcctacaagatcaatctaccgaagaagtaaatcttatagacacaatagagccaagcatgttgtgattgatgaaaggag |
6184927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 45336790 - 45336679
Alignment:
| Q |
19 |
atcaaccaaagaaaattaggactagtgatgatagtgcaaatgagaagaagaaatcaacacttctattgcaagtagatggtgatgatgttcacaaggaaca |
118 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||| | |||||||||||||| ||||||||| ||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
45336790 |
atcaaccaaagaaaatttgtactggtgatgatactacaaatgagaagaag---tcaacacttgaattgcaaatagatggtgatgatggtcataaggaaca |
45336694 |
T |
|
| Q |
119 |
tgaattagagaaagc |
133 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
45336693 |
tggattagagaaagc |
45336679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University