View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_71 (Length: 235)
Name: NF21165_low_71
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_71 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 43299768 - 43299969
Alignment:
| Q |
18 |
catgaaacacaatcataaatataagtattcattaaaacaacactaaactatggaaatcaaaccaaacatgaataaagctaagtgatgtaaaagaaaagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43299768 |
catgaaacacaatcataaatataagtattcattaaaacaacactaaactatggaaatcaaaccaaacatgaataaagctaagtgatgtaaaagaaaagca |
43299867 |
T |
|
| Q |
118 |
aaaggagaaaaagttagtacatacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaagcaagaagtcagaaacatgtgtgttggcttca |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43299868 |
aaaagagaaaaagttagtacatacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaagcaagaagtcagaaacatgtgtgttggcttca |
43299967 |
T |
|
| Q |
218 |
ac |
219 |
Q |
| |
|
|| |
|
|
| T |
43299968 |
ac |
43299969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 34224958 - 34224911
Alignment:
| Q |
139 |
tacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaag |
186 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34224958 |
tacaggaagatcaggaatgtaatcagacaagtgaggaacatcttcaag |
34224911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University