View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_low_9 (Length: 528)

Name: NF21165_low_9
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_low_9
NF21165_low_9
[»] chr3 (7 HSPs)
chr3 (15-517)||(43906651-43907151)
chr3 (15-93)||(43895569-43895647)
chr3 (251-290)||(43895418-43895457)
chr3 (136-175)||(43895494-43895533)
chr3 (378-433)||(39964307-39964362)
chr3 (375-433)||(10841767-10841825)
chr3 (396-432)||(50143907-50143943)
[»] chr4 (7 HSPs)
chr4 (394-440)||(19936500-19936546)
chr4 (401-451)||(16203436-16203486)
chr4 (378-443)||(6087506-6087571)
chr4 (378-439)||(51313473-51313534)
chr4 (398-454)||(1122174-1122230)
chr4 (394-438)||(9993533-9993577)
chr4 (396-432)||(51333458-51333494)
[»] chr7 (6 HSPs)
chr7 (378-451)||(24617791-24617864)
chr7 (378-438)||(37491280-37491340)
chr7 (395-433)||(48445976-48446014)
chr7 (395-431)||(18713532-18713568)
chr7 (394-438)||(36502335-36502379)
chr7 (394-438)||(44819671-44819715)
[»] chr8 (3 HSPs)
chr8 (394-438)||(24052917-24052961)
chr8 (394-438)||(1988932-1988976)
chr8 (381-433)||(15037762-15037814)
[»] chr2 (2 HSPs)
chr2 (395-451)||(29765754-29765810)
chr2 (395-451)||(14928105-14928161)
[»] chr1 (8 HSPs)
chr1 (395-439)||(11016679-11016723)
chr1 (378-433)||(5246214-5246269)
chr1 (401-439)||(15497488-15497526)
chr1 (381-438)||(3906837-3906894)
chr1 (394-439)||(6156640-6156685)
chr1 (395-432)||(30800299-30800336)
chr1 (378-439)||(39940559-39940620)
chr1 (394-438)||(19175677-19175721)
[»] chr6 (1 HSPs)
chr6 (395-433)||(26388203-26388241)
[»] chr5 (3 HSPs)
chr5 (395-433)||(7135342-7135380)
chr5 (395-433)||(21032622-21032660)
chr5 (394-438)||(14144334-14144378)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Complemental strand, 43907151 - 43906651
Alignment:
Q  15 acaaatatccaaacatactcaaaggcatcaattttgatcttcctgatatgatatcttctgcccctcaattgccaggtaagtctatattttattgttgtaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907151 acaaatatccaaacatactcaaaggcatcaattttgatcttcctgatatgatatcttctgcccctcaattgccaggtaagtctatattttattgttgtaa 43907052  T
Q  115 ttcaaacgtgaacatttatatctaatttgaaaaaatagagttagattgacaaatattagtgtaccaggaggctgtattatttgtcccttnnnnnnntata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  43907051 ttcaaacgtgaacatttatatctaatttgaaaaaatagagttagattgacaaatattagtgtaccaggaggctgtattatttgtcccttaaaaaaatata 43906952  T
Q  215 atagtgaaccacnnnnnnnnnnaggggattagagttgaccatgttagtttttcggtttgtccacggactaattttaaattttacggtatagtacgtacac 314  Q
    ||||||||||||          ||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  43906951 atagtgaaccac-ttttttttgaggggatt--agtggaccatgttagtttttcggtttgtccacgaactaattttaaattttacagtatagtacgtccac 43906855  T
Q  315 ctatcgtatatattataaacaa-nnnnnnnnagatttatttaattaataatgtacgtggcttattagactacatacactttttattcaataaatctaaaa 413  Q
    || |||||| ||||||||||||         ||||| ||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||    
T  43906854 ctttcgtatttattataaacaatttttttttagattcatttaatcaataatgtatgtgacttattagactacatacaccttttattcaataaatataaaa 43906755  T
Q  414 agtagatttttgtttataattgtgattagatgatgtatt-gttcactgatcaaatttattcaatttatttaactcttgtgaccatgtataggtataacac 512  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43906754 agtagatttttgtttataattgtgattagatgatgtattagtttac-aaacaaatttattcaatttatttaactcttgtgaccatgtataggtataacac 43906656  T
Q  513 acgtc 517  Q
    |||||    
T  43906655 acgtc 43906651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 43895647 - 43895569
Alignment:
Q  15 acaaatatccaaacatactcaaaggcatcaattttgatcttcctgatatgatatcttctgcccctcaattgccaggtaa 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||    
T  43895647 acaaatatccaaacatactcaaaggcatcaattttgatcttcctgatatgatctcttctgcacctcaatatccaggtaa 43895569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 43895457 - 43895418
Alignment:
Q  251 gaccatgttagtttttcggtttgtccacggactaatttta 290  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43895457 gaccatgttagttttttggtttgtccacggactaatttta 43895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 43895533 - 43895494
Alignment:
Q  136 ctaatttgaaaaaatagagttagattgacaaatattagtg 175  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43895533 ctaatttgaaaaaataaagttagattgacaaatattagtg 43895494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 39964362 - 39964307
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    |||||||||||||   |||||||||| |||||||||||||| |||||| |||||||    
T  39964362 tagactacatacataatttattcaatgaatctaaaaagtagttttttgcttataat 39964307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 10841767 - 10841825
Alignment:
Q  375 tattagactacatacactttttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    ||||||||||||||||   |||||| |||||||| |||| ||||||||||| |||||||    
T  10841767 tattagactacatacatcatttattaaataaatcaaaaatgtagatttttgcttataat 10841825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 50143943 - 50143907
Alignment:
Q  396 tattcaataaatctaaaaagtagatttttgtttataa 432  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  50143943 tattccataaatctaaaaaatagatttttgtttataa 50143907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 19936546 - 19936500
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtgatt 440  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||    
T  19936546 tttattcaatgaatctaaaaagttgatttttgtttataatagtgatt 19936500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 16203436 - 16203486
Alignment:
Q  401 aataaatctaaaaagtagatttttgtttataattgtgattagatgatgtat 451  Q
    ||||||||||||| ||| ||||||||||||||| |||||  ||||||||||    
T  16203436 aataaatctaaaatgtaaatttttgtttataatagtgatcggatgatgtat 16203486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 6087506 - 6087571
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtgattaga 443  Q
    |||||||||||||   |||||| ||||||||| |||| || ||||||| |||||||||||| ||||    
T  6087506 tagactacatacatcatttattgaataaatctgaaaattaaatttttgcttataattgtgactaga 6087571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 51313534 - 51313473
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtgat 439  Q
    ||||||| ||||| | | |||||||| || |||||||||| |||||||||||||| ||||||    
T  51313534 tagactaaatacattatgtattcaatgaagctaaaaagtacatttttgtttataaatgtgat 51313473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 1122230 - 1122174
Alignment:
Q  398 ttcaataaatctaaaaagtagatttttgtttataattgtgattagatgatgtattgt 454  Q
    ||||||| ||||||||| |||||||||||| ||||| ||||  || |||||||||||    
T  1122230 ttcaatagatctaaaaaatagatttttgttcataatagtgacaagttgatgtattgt 1122174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 9993533 - 9993577
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||    
T  9993533 tttattgaataaatctaaaaagtgaatttttgtttataatagtga 9993577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 51333494 - 51333458
Alignment:
Q  396 tattcaataaatctaaaaagtagatttttgtttataa 432  Q
    |||||||||||| |||||||||| |||||||||||||    
T  51333494 tattcaataaatttaaaaagtagttttttgtttataa 51333458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 24617864 - 24617791
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtgattagatgatgtat 451  Q
    ||||||| ||||| | |||||| ||| |||||||||| || |||||||||||||||  ||||| ||||||||||    
T  24617864 tagactatatacattatttattgaatgaatctaaaaaatacatttttgtttataatactgattggatgatgtat 24617791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 37491340 - 37491280
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||||||||||   |||||| ||||||||||||||||| ||||||| ||||||| ||||    
T  37491340 tagactacatacatcatttatttaataaatctaaaaagtaaatttttgcttataatagtga 37491280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 48446014 - 48445976
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  48446014 ttattcaataaatctaaaaagtaaatttttctttataat 48445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 18713532 - 18713568
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttata 431  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  18713532 ttattcaattaatctaaaaagtacatttttgtttata 18713568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 36502335 - 36502379
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||||| |||||||||||| || ||||||||||||||| ||||    
T  36502335 tttattcagtaaatctaaaaaatatatttttgtttataatagtga 36502379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 44819715 - 44819671
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||| |||||||||||||| || ||||||||||||||| ||||    
T  44819715 tttatttaataaatctaaaaaatacatttttgtttataatagtga 44819671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 24052917 - 24052961
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||||||| || |||||||||||||||||||||||||| ||||    
T  24052917 tttattcaatgaacctaaaaagtagatttttgtttataatagtga 24052961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 1988932 - 1988976
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||||||||||| |||||| || ||||||||||||||| ||||    
T  1988932 tttattcaataaatttaaaaaatatatttttgtttataatagtga 1988976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 15037814 - 15037762
Alignment:
Q  381 actacatacactttttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    ||||||||||   |||||| ||| || ||||||||||||||||||||||||||    
T  15037814 actacatacatcatttattgaatgaacctaaaaagtagatttttgtttataat 15037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 29765754 - 29765810
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataattgtgattagatgatgtat 451  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||  ||||| |||||    
T  29765754 ttattcaatgaatctaaaaagttgatttttggttataattgtgacgagatggtgtat 29765810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 14928161 - 14928105
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataattgtgattagatgatgtat 451  Q
    ||||||||||||  ||||| |||||||||| |||||||||||||   ||||||||||    
T  14928161 ttattcaataaacttaaaatgtagatttttatttataattgtgaacggatgatgtat 14928105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 11016679 - 11016723
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataattgtgat 439  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||    
T  11016679 ttattcaataaacctaaaaagttgatttttgtttataaatgtgat 11016723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 5246214 - 5246269
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    |||||||||||||   |||||||||| |||||||||| ||| ||||||||||||||    
T  5246214 tagactacatacatcatttattcaatgaatctaaaaaatagttttttgtttataat 5246269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 15497526 - 15497488
Alignment:
Q  401 aataaatctaaaaagtagatttttgtttataattgtgat 439  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  15497526 aataaatctaaaaagttgatttttgtttataaatgtgat 15497488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 3906837 - 3906894
Alignment:
Q  381 actacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||||||||  |||||| ||| |||||||||| || ||||||||||||||| ||||    
T  3906837 actacatacaccatttattaaatgaatctaaaaaataaatttttgtttataatagtga 3906894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 6156685 - 6156640
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtgat 439  Q
    |||||| ||| |||||||||||| |||||||||||||||| |||||    
T  6156685 tttattgaatgaatctaaaaagttgatttttgtttataatagtgat 6156640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 30800299 - 30800336
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataa 432  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  30800299 ttattcaatatatctaaaaagtagagttttgtttataa 30800336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 39940559 - 39940620
Alignment:
Q  378 tagactacatacactttttattcaataaatctaaaaagtagatttttgtttataattgtgat 439  Q
    ||||||||||||| | |||||| ||| ||||||||||||| ||||||  ||||||| |||||    
T  39940559 tagactacatacattatttattgaatgaatctaaaaagtaaatttttacttataatagtgat 39940620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 19175677 - 19175721
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    |||||| ||| ||||||||||||||||||||| ||||||| ||||    
T  19175677 tttattgaatgaatctaaaaagtagatttttgcttataatagtga 19175721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 26388241 - 26388203
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  26388241 ttattcaatatatctaaaaagtagagttttgtttataat 26388203  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 7135342 - 7135380
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  7135342 ttattcaataaatctaaaacgtagttttttgtttataat 7135380  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 21032622 - 21032660
Alignment:
Q  395 ttattcaataaatctaaaaagtagatttttgtttataat 433  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  21032622 ttattcaatatatctaaaaagtagaattttgtttataat 21032660  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 14144378 - 14144334
Alignment:
Q  394 tttattcaataaatctaaaaagtagatttttgtttataattgtga 438  Q
    ||||||||||||| ||||||||||||||| || ||||||| ||||    
T  14144378 tttattcaataaacctaaaaagtagatttatgcttataatagtga 14144334  T

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