View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21166_high_11 (Length: 258)
Name: NF21166_high_11
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 33541728 - 33541954
Alignment:
| Q |
13 |
aatatcaaactacccatagcaaatttcaaattcagataattcaagacattataattaacnnnnnnnnntcttactctacaattaagtgtatctttggttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33541728 |
aatatcaaactacccatagcaaatttcaaattcagataattcaagacattataattaacaaaaaaaa-tcttactctacaattaagtgtatctttggttc |
33541826 |
T |
|
| Q |
113 |
taaggggataagaattgatttttctgtctaaaattgagtcaaaggtaaaataatttgtgtttggatacatttactttgaaacaagttgaacaataaatct |
212 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33541827 |
taaggtgataagaattgatttttgggtctaaaattgagtcaaaggtaaaataatttgcgtttcgatacatttactttgaaacaagttgaacaataaattt |
33541926 |
T |
|
| Q |
213 |
gcgtttaaaaatcaattctactagaaaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33541927 |
gcgtttaaaaatcaattctactagaaaa |
33541954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 16971978 - 16972110
Alignment:
| Q |
97 |
agtgtatctttggttctaaggggataagaattgatttttctgtctaaaattgagtcaaaggtaaaataatttgtgtttggatacatttactttgaaacaa |
196 |
Q |
| |
|
||||||| |||||||||| || || ||||||||||| | | |||||| ||||| |||||||||| ||||||||||| ||||||| | | || | |
|
|
| T |
16971978 |
agtgtatgtttggttctacggtgacaagaattgatt---cagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtga |
16972074 |
T |
|
| Q |
197 |
gttgaacaataaatctgcgtttaaaaatcaattcta |
232 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |
|
|
| T |
16972075 |
tttgaacaataaatttgtgtttaaaaatcaattcta |
16972110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 32736592 - 32736550
Alignment:
| Q |
141 |
taaaattgagtcaaaggtaaaataatttgtgtttggatacatt |
183 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
32736592 |
taaaagtgagtcaaaggtaaaataatttgtatttgaatacatt |
32736550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University