View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21166_high_13 (Length: 245)
Name: NF21166_high_13
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 28928630 - 28928423
Alignment:
| Q |
37 |
gagtgtatttgtatagcatagcaataaaatttccgagtaataataatgatgattttcggacaaattcaccacctt--------tcactcactcactcact |
128 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28928630 |
gagtgtatttgtacaacatagcaataaaatttccgagtaataataatgatgattttcggacaaattcaccaccttacagtcactcactcactcagtcact |
28928531 |
T |
|
| Q |
129 |
ttcaccttttagtatagccatccatttatttatgtaacaaattcacacaaatacattttctttcattttcgtaacgcttcaaacgttccttacaaggtat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28928530 |
ttcaccttttagtatagccatccatttatttatgtaacaaattcacacaaatacattttctttcattttcgtaacgcttcaaacgttccttacaaggtat |
28928431 |
T |
|
| Q |
229 |
agtatctc |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
28928430 |
agtatctc |
28928423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University