View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_high_2 (Length: 602)
Name: NF21166_high_2
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_2 |
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| [»] scaffold0006 (4 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 9 - 584
Target Start/End: Complemental strand, 131104 - 130529
Alignment:
| Q |
9 |
tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgttgttgagttcttattgtcacttttagcaggaagtta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
131104 |
tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgttgttcagttcttattgtcgcttttagcaggaagtta |
131005 |
T |
|
| Q |
109 |
tcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcg |
208 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131004 |
tcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactagtcaatttattgtttttctgaagaagatatatgataaggaaattttgca |
130905 |
T |
|
| Q |
209 |
tagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgttagaattt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130904 |
tagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgttagaattt |
130805 |
T |
|
| Q |
309 |
cgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgtttt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130804 |
cgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgtttt |
130705 |
T |
|
| Q |
409 |
gcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataattattttattattgaatgttg |
508 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||| | |
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| T |
130704 |
gcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaataatgattttattattgcatgtcg |
130605 |
T |
|
| Q |
509 |
acaagtacaaacaattacattgtttagttcaatagaataaagtactccaaagttacaacatagaccagaaacttac |
584 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||| |
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| T |
130604 |
acaagtacaaacgattacattgttgagttcaatagaataaactacaccaaagggacaacatagaccagaaacttac |
130529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 210 - 408
Target Start/End: Complemental strand, 82193 - 81993
Alignment:
| Q |
210 |
agaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgt--tagaatt |
307 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||| | || | | ||||| |
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| T |
82193 |
agaggagattgatgattccccacggttcagctgttggaggattcgcttccttccatggaaccagagggatcggattttgccaccgattcatatttgaatt |
82094 |
T |
|
| Q |
308 |
tcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgttt |
407 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
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| T |
82093 |
tcgtaaccatcaccaacgctctttcgatcaatttctcgcaaccacctgataagtgccaaattttcttaaaatctaatataaggcacttattaacttgttt |
81994 |
T |
|
| Q |
408 |
t |
408 |
Q |
| |
|
| |
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|
| T |
81993 |
t |
81993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 194870 - 194825
Alignment:
| Q |
87 |
tgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
132 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
194870 |
tgtcacttttagcaggaagttatcattagcaggttctgtacaatgt |
194825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 125370 - 125322
Alignment:
| Q |
84 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
125370 |
tattgtcacttttagcaggaagttatcattagtaggttttgtacaatgt |
125322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 9 - 584
Target Start/End: Complemental strand, 13602447 - 13601872
Alignment:
| Q |
9 |
tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgttgttgagttcttattgtcacttttagcaggaagtta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
13602447 |
tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgttgttcagttcttattgtcgcttttagcaggaagtta |
13602348 |
T |
|
| Q |
109 |
tcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtagtcaatttattgtttttctgaagaagatatatgataaggaaattttgcg |
208 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602347 |
tcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactagtcaatttattgtttttctgaagaagatatatgataaggaaattttgca |
13602248 |
T |
|
| Q |
209 |
tagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgttagaattt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602247 |
tagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgttagaattt |
13602148 |
T |
|
| Q |
309 |
cgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgtttt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602147 |
cgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgtttt |
13602048 |
T |
|
| Q |
409 |
gcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataattattttattattgaatgttg |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||| | |
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| T |
13602047 |
gcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaataatgattttattattgcatgtcg |
13601948 |
T |
|
| Q |
509 |
acaagtacaaacaattacattgtttagttcaatagaataaagtactccaaagttacaacatagaccagaaacttac |
584 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||| |
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|
| T |
13601947 |
acaagtacaaacgattacattgttgagttcaatagaataaactacaccaaagggacaacatagaccagaaacttac |
13601872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 237 - 584
Target Start/End: Original strand, 19153081 - 19153437
Alignment:
| Q |
237 |
caggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatc |
336 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||| ||| || ||| |||| ||| || ||||| | |||| || ||||||||||||| ||| |
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| T |
19153081 |
caggtgtcggaggattcaattccttccatggaacatgagagatcggattccaccaccaactcattcaaattttgtaaccgtcgccaccgctctttcaatc |
19153180 |
T |
|
| Q |
337 |
aatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgttttgcaagaaatcttatgaaatccccataat |
436 |
Q |
| |
|
||||||| |||||||| | ||||| |||||||||| |||||||||||||||| | |||||||||| ||||| ||||||| || ||||||||||| ||| |
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|
| T |
19153181 |
aatttctggcaaccacctgataagcgccaagtttacttaaaatccaatataaaacgcttattaacttcttttgaaagaaatattgtgaaatccccacaat |
19153280 |
T |
|
| Q |
437 |
tccttgttgaaatcctatgtatgatatgagataaatattgacaatgaata------------attattttattattgaatgttgacaagtacaaacaatt |
524 |
Q |
| |
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||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||| ||| || |||||||||||||| || |
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| T |
19153281 |
tccttgttgaaatcctatg-----taggagataaatattggcaatgaataaaaattgttaatattattttattcttgcattttgacaagtacaaatggtt |
19153375 |
T |
|
| Q |
525 |
acattgtttagttcaatagaataaagtac--tccaaagttacaacatagaccagaaacttac |
584 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||| || ||| |||| ||||||||||||||| |
|
|
| T |
19153376 |
acattgtggagttccatagaataaactactatcctaaattaaaacaaagaccagaaacttac |
19153437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 13487606 - 13487572
Alignment:
| Q |
82 |
cttattgtcacttttagcaggaagttatcattaga |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
13487606 |
cttattgtcacttttaacaggaagttatcattaga |
13487572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 21770196 - 21770132
Alignment:
| Q |
84 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaaga |
148 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||| |||||||| ||||||| | || |||||||||| |
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|
| T |
21770196 |
tattctcactattaccaggaagttatcattagcaggttctgtacaatgtaaaaacgtacaaaaga |
21770132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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