View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21166_high_6 (Length: 338)
Name: NF21166_high_6
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 14246101 - 14245980
Alignment:
| Q |
14 |
cagagacaaataactc--tattattttcctatgcaagggctaataattgtgtaatctcacaacccattatctaagactcgagagtatgtttaaactgatg |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
14246101 |
cagagacaaataactcaatattattttcctaagcaagggctaataattgtgtaatctcacaacccattatc-aagactcaagagtatgtttaaactgatg |
14246003 |
T |
|
| Q |
112 |
gtatagtgtgaaattagtgaaat |
134 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14246002 |
gtatagtgtgaaattagtgaaat |
14245980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 14245434 - 14245343
Alignment:
| Q |
225 |
tgacagccctttgaaacaattaatcaccacctgcgcatccagttcaaagatgaccttgttaagattaagttccgcagccacttggagtcccc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14245434 |
tgacagccctttgaaacaattaatcaccacctgtgcatccagttcaaagatgaccttgttaagattaagttccgcagccacttggagtcccc |
14245343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 14245549 - 14245467
Alignment:
| Q |
148 |
ctagctcaggcgcaacctcattgcaggcacgactaatgtaaaaaacagaaacatcaaccatattggcatacaactcatgacag |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14245549 |
ctagctcacgcgcaacctcattgcaggcacgactaatgtaaaaaacagaaacatcaaccatattggcatacaactcatgacag |
14245467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 14380124 - 14380225
Alignment:
| Q |
33 |
tattttcctatgcaagggctaataattgtgtaatctcacaacccattatctaagactcgagagtatgtttaaactgatggtatagtgtgaaattagtgaa |
132 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||| ||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| || |||||| |
|
|
| T |
14380124 |
tattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtgtggaaccagtgaa |
14380223 |
T |
|
| Q |
133 |
at |
134 |
Q |
| |
|
|| |
|
|
| T |
14380224 |
at |
14380225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 23748927 - 23748847
Alignment:
| Q |
150 |
agctcaggcgcaacctcattgcaggcacgactaatgtaaaaaacagaaacatcaaccatattggcatacaactcatgacag |
230 |
Q |
| |
|
|||||| ||||| ||| ||| ||| |||||||||| ||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
23748927 |
agctcatgcgcagccttatttcagacacgactaataaaaaaaacagaaacatcagccatattggcatacaattcgtgacag |
23748847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 23548069 - 23548015
Alignment:
| Q |
176 |
acgactaatgtaaaaaacagaaacatcaaccatattggcatacaactcatgacag |
230 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
23548069 |
acgactaataaaaacaacagaaacatcagccatattggcatacaaatcgtgacag |
23548015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University