View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_high_7 (Length: 334)
Name: NF21166_high_7
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5038037 - 5038356
Alignment:
| Q |
1 |
ctgaaaaatttaaatagcatggaaaataatatgataagatgtttgtattaaatatttgcattatgatatataaattgacagaccaagagggaccaaactg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038037 |
ctgaaaaatttaaatagcagggaaaataatatgataagatgtttgtattaaatatttgcattatgatatataaattgacagaccaagagggaccaaactg |
5038136 |
T |
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| Q |
101 |
cacgcagtgtcacatgctcccatctaataaaataagagttccaatatttttggctaaagataagatgaaatgattttgcttcc--nnnnnnnnnnnnatt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
5038137 |
cacgcagtgtcacatgctcccatctaataaaataagagttccaatatttttggctaaagataagatgaaatcattttgcttccttttttaaaaaaaaaaa |
5038236 |
T |
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| Q |
199 |
ataaatattttgttatcaagatattacttgaaaagcaagactcctatttcaaaacaaacagaattgggtctaagaggtagtcttccacagtgtactgacc |
298 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038237 |
atatatattttgttatcaagatattacttgaaaagcaagactcctatttcaaaacaaacagaattgggtctaagaggtagtcttccacagtgtactgacc |
5038336 |
T |
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| Q |
299 |
aaattgctaaatctggattg |
318 |
Q |
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|||||||||||||||||||| |
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| T |
5038337 |
aaattgctaaatctggattg |
5038356 |
T |
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