View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21166_high_9 (Length: 259)
Name: NF21166_high_9
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 34573425 - 34573664
Alignment:
| Q |
1 |
caaaatgctttcaaaatgactaaagtatattttcaagtatcctctgacggaattatttttgtctaataatccatgtcttgtggtcagcatctagtttata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573425 |
caaaatgctttcaaaatgactaaaatatattttcaagtatcctctgacggaattattttcgtctaataatccatgtcttgtggtcagcatctagtttata |
34573524 |
T |
|
| Q |
101 |
atatgactgaggaacaaagacattagaaagaaaaagaggacttagtgtgactagaagaagcagctgtttttgaaaggatggaaatttgatgcactgttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||| |
|
|
| T |
34573525 |
atatgactgaggaacaaagacattagaaagaaaaagaggacttagtgtgactagaagaagcagctgttttttaaaggatgg----ttgacgcagtgttgt |
34573620 |
T |
|
| Q |
201 |
ttagctaagcaaggaacgtagacagcagaaggccttgctgaaaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573621 |
ttagctaagcaaggaacgtagacagcagaaggccttgctgaaaa |
34573664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University