View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_1 (Length: 695)
Name: NF21166_low_1
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 611
Target Start/End: Original strand, 8011165 - 8011778
Alignment:
| Q |
19 |
tgaactgggctagaagtaataatggacagtatttgacatcagatgatgatttctttaggaaccctgttgttaaaggtttctacatcaatcatgttaaggt |
118 |
Q |
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| T |
8011165 |
tgaactgggctagaagtaataatggacagtatttgacatcagatgatgatttctttaggaaccctgttgttaaaggtttctacatcaatcatgttaaggt |
8011264 |
T |
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| Q |
119 |
cagtagaaccccttttgtcttgtttggtaaaaaatgtatatggagattatcataaggataaggcattaggaaatgaaatttgcttccttttattttacat |
218 |
Q |
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| T |
8011265 |
cagtagagccccttttgtcttgtttggtaaaaaatgtatatggagattatcataaggataaagcattaggaaatgaaatttgcttccttttattttacat |
8011364 |
T |
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| Q |
219 |
acataaatatatgtttgtaggaatcaaaactcattttgagaatttttaataaaatccgtgactgtgattgagac-------------------atgcagt |
299 |
Q |
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| T |
8011365 |
acataaatatatgtttgtaggaatgaaaactcattttgagaatttttaataaaatccgtgactttgattgagactgcatcaatggtgctattaatgcagt |
8011464 |
T |
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| Q |
300 |
ctcaatcacagtcacgaatttgctagcaattggctgcaatttaatacttcactcttatttatgagttaccataattaatcttgcttttga--tctgatga |
397 |
Q |
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| T |
8011465 |
ctcaatcacagtcacaaatttgctagcaattggctgcaatttaatacttcactcttatttatgagttaccataattaatcttgcttttgaaatctgatga |
8011564 |
T |
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| Q |
398 |
tacttatataatatataggaggattatagttttgttgttaggattagataatttgatgtgatttattttcttgcatcttccacagactgttcttaacagg |
497 |
Q |
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| T |
8011565 |
taattatataatatataggaggattatagttttgttgttaggattagataatttgatgtgatttattttcttgcatcttccacagactgttcttaacagg |
8011664 |
T |
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| Q |
498 |
tacaacagttttactggaattcattacaaagatgatccaacaatcatggcatgggagcttatgaatgaacctaggtgtacatcagatccttcaggaagga |
597 |
Q |
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| T |
8011665 |
tacaacagttttactggaattcattataaagatgatccaacaatcatggcatgggagcttatgaatgaacctaggtgtacatcagatccttcaggaagga |
8011764 |
T |
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| Q |
598 |
ccattcaggtcaag |
611 |
Q |
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| T |
8011765 |
ctattcaggtcaag |
8011778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 38155302 - 38155255
Alignment:
| Q |
522 |
tacaaagatgatccaacaatcatggcatgggagcttatgaatgaacct |
569 |
Q |
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| T |
38155302 |
tacaaagatgatccaactatttttgcatgggagcttatgaatgaacct |
38155255 |
T |
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