View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21166_low_10 (Length: 288)

Name: NF21166_low_10
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21166_low_10
NF21166_low_10
[»] chr2 (1 HSPs)
chr2 (8-288)||(33541470-33541751)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 33541470 - 33541751
Alignment:
Q  8 ccaagaaaatacaatttcaagtttcatctagaaacttctgatctgagtnnnnnnn--gtacctagtaacttttgatacatatcccttcttttttcttctt 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||| |||||    
T  33541470 ccaaaaaaatacaatttcaagtttcatctagaaacttctgatctgagtaaaaaaaaagtacctagtaacttttgatacatatcccttttttttt-ttctt 33541568  T
Q  106 cttattttatggattttcatatatctatgactctaaactgtgtttcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541569 cttattttatggattttcatatatctatgactctaaactgtgtctcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggc 33541668  T
Q  206 tccattctctctttttccatgtaaatcaaacacattataaaatcccctaaaactacaacaatatcaaactacccatagcaaat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541669 tccattctctctttttccatgtaaatcaaacacattataaaatcccctaaaactacaacaatatcaaactacccatagcaaat 33541751  T

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