View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_17 (Length: 240)
Name: NF21166_low_17
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29424514 - 29424294
Alignment:
| Q |
1 |
ttttttagcaaatcaaatgctttttgatgtattagagtnnnnnnnnnntcatgagtcatcattaaacacacttacttgtaaaactaacaagtgcatctgt |
100 |
Q |
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| T |
29424514 |
ttttctagcaaatcaaatgctttttgatgtattagagtaaaaaaaaaatcatgagtcatcattaaacacacttacttgtaaaactaacaagtgcatctgt |
29424415 |
T |
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| Q |
101 |
gttgtagctgggcttaatgacttcacttaattcaggtgcattagttgcataatgggaagtgtaatagtttaatccaataaaatcaaaggatcctttaacg |
200 |
Q |
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| T |
29424414 |
gttgtagctgggcttaatgacttcacttaattcaggtgcattagttgcataatgggaagtgtaatagtttaatccaataaaatcaaaggatcctttaacg |
29424315 |
T |
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| Q |
201 |
agctttgcttgatatgttgag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
29424314 |
agctttgcttgatatgttgag |
29424294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 29457443 - 29457590
Alignment:
| Q |
64 |
aaacacacttacttgtaaaactaacaagtgcatctgtgttgtagctgggcttaatgacttcacttaattcaggtgcattagttgcataatgggaagtgta |
163 |
Q |
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| T |
29457443 |
aaacacacttacgtgaaagaattactagtggatcagtgttgtagctgggctt---gactttacttaattcaggtgcattagttgcataactggaagtata |
29457539 |
T |
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| Q |
164 |
atagtttaatccaataaaatcaaaggatcctttaacgagctttgcttgata |
214 |
Q |
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| T |
29457540 |
atagtttaatccaataaaatcaaaggaccctcttacaagctttgcttgata |
29457590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 29406992 - 29406913
Alignment:
| Q |
126 |
cttaattcaggtgcattagttgcataatgggaagtgtaatagtttaatccaataaaatcaaaggatcctttaacgagctt |
205 |
Q |
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|||||||||||||||| || ||||||| |||||||||||||||||||| || ||||||||||| ||||| || ||||| |
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| T |
29406992 |
cttaattcaggtgcatcggtagcataatttgaagtgtaatagtttaatccgatgaaatcaaaggacccttttacaagctt |
29406913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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