View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_19 (Length: 227)
Name: NF21166_low_19
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30770735 - 30770509
Alignment:
| Q |
1 |
ccaaaaagagagtaatgttacacaaagcataaccaaccataccttgtaactgaatctggtgaaggaagactcacaccaccactagtccttggttgaccaa |
100 |
Q |
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| T |
30770735 |
ccaaaaagagagtaatgttacacaaagcataaccaaccataccttgtaactgaatctggtgatggaagactcacaccaccactagtccttggttgaacaa |
30770636 |
T |
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| Q |
101 |
gctgcaatggcaaaggcggttttcgagatccgattaatcctccataatctgatctctcatcatccgaaacaaccctattcacattaacatcaccactagt |
200 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30770635 |
gctgcaacggtaaaggaggttttcgagatccgattaatcctccataatctgatctctcatcatcagaaacaaccctattcacattaacatcaccactagt |
30770536 |
T |
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| Q |
201 |
agcagcaacaactccaccaaaagccat |
227 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
30770535 |
agcagtaacaactccaccaaaagccat |
30770509 |
T |
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