View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_3 (Length: 563)
Name: NF21166_low_3
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 74 - 545
Target Start/End: Original strand, 37195127 - 37195596
Alignment:
| Q |
74 |
gctccaatccttcaaatctctctcgaagactcttccttccttctgtttcgggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatga |
173 |
Q |
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| T |
37195127 |
gctccaatccttcaaatctctctcgaagactcttccttccttctgtttccggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatga |
37195226 |
T |
|
| Q |
174 |
agcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaacta---actagtac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37195227 |
agcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaactagtaactagtac |
37195326 |
T |
|
| Q |
271 |
tcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattagatcctcgtcaaaaagcgtgtaggtttattcgtttttccga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
37195327 |
tcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattggatcctcgtcaaaaggcgtgtaggtttattcgtttttccga |
37195426 |
T |
|
| Q |
371 |
actttcgtaaatatcaattgaatttggaattggaatgtattgatattttgagttccaataccagatctttggcaaagaggtctctcactttactacttgg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195427 |
actttcgtaaatatcaattgaatttggaattggaatgtattgatattttgagttccaataccagatctttggcaaagaggtctctcactttactacttgg |
37195526 |
T |
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| Q |
471 |
ataggtactcacacctcacctcacctcacctacttttatttttctgtggttggttatgttgaaaaaagaatatta |
545 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195527 |
ataggtactca-----cacctcacctcacctacttttatttttctgtggttggttatgttgaaaaaagaatatta |
37195596 |
T |
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