View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_4 (Length: 525)
Name: NF21166_low_4
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 13 - 507
Target Start/End: Complemental strand, 37961621 - 37961127
Alignment:
| Q |
13 |
cacagacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961621 |
cacaaacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
37961522 |
T |
|
| Q |
113 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961521 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
37961422 |
T |
|
| Q |
213 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37961421 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccga |
37961322 |
T |
|
| Q |
313 |
tccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961321 |
tccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaa |
37961222 |
T |
|
| Q |
413 |
aactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttct |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37961221 |
aactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcatcatccctataatggctattcaagtcaccgttct |
37961127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 50 - 507
Target Start/End: Original strand, 37906481 - 37906941
Alignment:
| Q |
50 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
149 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || || | || ||||||||||| |||||||||| | |
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| T |
37906481 |
atgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacactccctctcaccttcttcgacatttcatggttttact |
37906580 |
T |
|
| Q |
150 |
gtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
246 |
Q |
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|||| || | || ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
37906581 |
gtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37906680 |
T |
|
| Q |
247 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatc |
346 |
Q |
| |
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|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
37906681 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatt |
37906780 |
T |
|
| Q |
347 |
tccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccac |
446 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37906781 |
tccttcactgtagctgaatcctcagcagacttcaacatcctcgtatctgattcacaagatgctcaaaactggcaccatctcgttccaaatttacctccac |
37906880 |
T |
|
| Q |
447 |
ctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttct |
507 |
Q |
| |
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||||||||||||||||||||| ||| || |||||||||||| |||||| |||||| ||||| |
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| T |
37906881 |
ctcgtaccgaacaagacaacattcgtgttatccctataatgtctattccagtcactgttct |
37906941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 50 - 460
Target Start/End: Original strand, 37914644 - 37915057
Alignment:
| Q |
50 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
149 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| | | || | |||||||| ||||| | |||||||| | |
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| T |
37914644 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactttctttgacatttcttggttttact |
37914743 |
T |
|
| Q |
150 |
gtca---cccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
246 |
Q |
| |
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| | ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
37914744 |
gcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37914843 |
T |
|
| Q |
247 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatc |
346 |
Q |
| |
|
|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
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|
| T |
37914844 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatc |
37914943 |
T |
|
| Q |
347 |
tccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccac |
446 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
37914944 |
tccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccac |
37915043 |
T |
|
| Q |
447 |
ctcgtaccgaacaa |
460 |
Q |
| |
|
||||||| |||||| |
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| T |
37915044 |
ctcgtactgaacaa |
37915057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
104 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
203 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
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| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
204 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
264 |
Q |
| |
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| || ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
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|
| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 3783017 - 3783084
Alignment:
| Q |
314 |
ccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
381 |
Q |
| |
|
||||| ||||| |||||| ||| ||||||| ||||||||||| | |||||||||| |||| ||||||| |
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| T |
3783017 |
ccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttagcaaacttcaa |
3783084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
185 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
279 |
Q |
| |
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|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
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| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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