View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_5 (Length: 363)
Name: NF21166_low_5
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 160 - 331
Target Start/End: Original strand, 21141594 - 21141766
Alignment:
| Q |
160 |
ttgtttaaaactcgatttgagttcgatacaaacatgttttttagctcaaactcggtccatttcaaattcacaaacaagttaattaggtgaaacattgttt |
259 |
Q |
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| T |
21141594 |
ttgtttaaaactcaatttgagttcgataaaaacatgttttttagctcgaactttgttcatttcaaattcacaaacaaattaattaggttaaactttgttt |
21141693 |
T |
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| Q |
260 |
agtcaaattagataattcaaaaattgattcaaaataaaaactatctaaaacgtat-caaccatactattttat |
331 |
Q |
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| T |
21141694 |
agtcaatttagataattcaaaaattgattcaaaataaaaactatctcaaacgtatccaaccatattattttat |
21141766 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 21141449 - 21141532
Alignment:
| Q |
48 |
agatcttcccattctatctaatgatgcaatccaatgatttt-gaaattaaatgcaatccccccaatttgaccatctaggatgtt |
130 |
Q |
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| T |
21141449 |
agatcttcccattctatccaaatatgcaatctaatgatttttgaaattaaatgcaattaccccaatttgagcatctaggatgtt |
21141532 |
T |
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