View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21166_low_6 (Length: 352)
Name: NF21166_low_6
Description: NF21166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21166_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2389914 - 2390265
Alignment:
| Q |
1 |
caagcttttccatttgaatctgtgggcagcggtggaggattttgatcaataacccatatcttattccttgcaaatccatgttgctctagtgttccacggt |
100 |
Q |
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| T |
2389914 |
caagcttttccatttgaatctgtgggcagcggtggaggattttgatcaataacccatatcttattccttgcaaatccatgttgctctagtgttccacggt |
2390013 |
T |
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| Q |
101 |
ttccaaactaaaaaatcacaccaaccaacctttttatctatctatctatctatatagatttgtgtaattcaggtgttaaataaatagtactgct------ |
194 |
Q |
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| T |
2390014 |
ttccaaactaaaaaatcacaccaaccaacctttttatctatctatctatctatatagatttgtgtaattcaggtgttaaataaatagtactgctatctaa |
2390113 |
T |
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| Q |
195 |
-atctaaaattacctgtggaaaacagattggaattcctcctcgtactggttttggaggagtgtagacggcctaattggaaagagagagaaaatgtcataa |
293 |
Q |
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| T |
2390114 |
aatctaaaattacctgtggaaaacagattggaattcctcctcgtactggttttggaggagtgtagacggcctaattggaaagagagagaaaatgtcataa |
2390213 |
T |
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| Q |
294 |
aaatttgttacattctctaaacaaaattaagggtaattggtaatattcttgg |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2390214 |
aaatttgttacattctctaaacaaaattaagggtaattggtaatattgttgg |
2390265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 36807825 - 36807781
Alignment:
| Q |
204 |
tacctgtggaaaacagattggaattcctcctcgtactggttttgg |
248 |
Q |
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| T |
36807825 |
tacctgtggaaaacatattggaattcctcctcgtattgcttttgg |
36807781 |
T |
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