View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_high_10 (Length: 388)
Name: NF21167_high_10
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 28 - 384
Target Start/End: Complemental strand, 45512587 - 45512231
Alignment:
| Q |
28 |
caaatagtagtgaccaaaatgttcttcttctcgcgaccaagatggttggtgacaaggattcatgagatcaagtttgacaacatgtctagtaacattgtca |
127 |
Q |
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| T |
45512587 |
caaatagtagtgaccaaaatgttcttcttctcgcgaccaaaatggttggtgacaaggattcatgagatcaagtttgacaacatgtctagtaacattgtca |
45512488 |
T |
|
| Q |
128 |
caaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggctt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512487 |
caaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggctt |
45512388 |
T |
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| Q |
228 |
gcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512387 |
gcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcc |
45512288 |
T |
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| Q |
328 |
catgttttctatctctgtttctattgaaataattgaatgatggttttcatctcactc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45512287 |
catgttttctatctctgtttctattgaaataattgaatgatggttttcatttcactc |
45512231 |
T |
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