View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21167_high_11 (Length: 384)

Name: NF21167_high_11
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21167_high_11
NF21167_high_11
[»] chr2 (21 HSPs)
chr2 (14-370)||(39160959-39161315)
chr2 (14-370)||(39207879-39208235)
chr2 (70-359)||(39391524-39391813)
chr2 (60-364)||(39398857-39399170)
chr2 (67-237)||(39450421-39450591)
chr2 (235-364)||(39479023-39479152)
chr2 (61-356)||(39467062-39467366)
chr2 (67-209)||(39458131-39458273)
chr2 (269-366)||(39602301-39602398)
chr2 (73-236)||(39488171-39488334)
chr2 (269-370)||(39199182-39199283)
chr2 (269-367)||(39381916-39382014)
chr2 (73-217)||(39474277-39474421)
chr2 (159-230)||(39199469-39199540)
chr2 (269-364)||(39369561-39369656)
chr2 (67-142)||(39479233-39479308)
chr2 (269-370)||(39220472-39220573)
chr2 (47-96)||(39601893-39601942)
chr2 (157-217)||(39136293-39136353)
chr2 (158-230)||(39382200-39382272)
chr2 (294-358)||(39427418-39427482)
[»] chr5 (1 HSPs)
chr5 (16-370)||(33559494-33559848)
[»] chr6 (1 HSPs)
chr6 (61-237)||(16112340-16112516)
[»] chr7 (1 HSPs)
chr7 (157-217)||(19806654-19806714)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 39160959 - 39161315
Alignment:
Q  14 agatggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 113  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39160959 agatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 39161058  T
Q  114 aaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 213  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161059 aaatcgtttaagaaatgcataaggaagaggcaagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 39161158  T
Q  214 agaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161159 agaacaagctagttagttgtgttaatgaaattcacaacaaaatgcagcgaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 39161258  T
Q  314 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161259 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 39161315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 39208235 - 39207879
Alignment:
Q  14 agatggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 113  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208235 agatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 39208136  T
Q  114 aaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 213  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208135 aaatcgtttaagaaatgcataaggaagaggcaagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 39208036  T
Q  214 agaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208035 agaacaagctagttagttgtgttaatgaaattcacaacaaaatgcagcgaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 39207936  T
Q  314 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39207935 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 39207879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 70 - 359
Target Start/End: Complemental strand, 39391813 - 39391524
Alignment:
Q  70 atgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtc 169  Q
    ||||||| |||||||| |||||||| ||||||  ||||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||| |||    
T  39391813 atgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaaggaagagtcgagtagaaaaagagagattgctgtc 39391714  T
Q  170 catccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagtt 269  Q
    |||  |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||  || |||||||| ||||||||    
T  39391713 cataaagaaagatattgaagagtgctgcaaagagcttgaagataagaacaagcaagttagttgtgttaataaaattcatgacgaaatgcagagaaaagtt 39391614  T
Q  270 gaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgca 359  Q
    ||| |||||||||||||||| | | ||||||||| |||| ||  |||||||||| ||| |||| || |||||||| ||||||||||||||    
T  39391613 gaagtgaaggaagaggaactgaaggctctttcccaaaaaattgttgaatgtactgtggaacttcaggccaaagagaaagatcttgatgca 39391524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 39399170 - 39398857
Alignment:
Q  60 aaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaaggga 159  Q
    |||||||||||| |||||||||| ||||| | ||||||| || |||||||| |||||| |||||||||||||||||||||||||  ||| ||| |   ||    
T  39399170 aaatcagctgataaatcattttcatcgctcaagaaagaagttaaattggtagaaaaattgtttaagaaatgcaaaaggaagaggaaagtagaagagaaga 39399071  T
Q  160 gattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtg---------ttaatggaattcacaa 250  Q
    |||||||||||||  ||| |||||||||||| ||||| ||||| |||| | | |||||  ||| ||||| |||||         |||||| |||||||||    
T  39399070 gattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaagcagcaagttatttgtgttagaagacttaatgaaattcacaa 39398971  T
Q  251 caaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagat 350  Q
    ||| |||| ||| ||| |||||| ||||||||||||||||| | ||||| ||| ||||||| | ||||||| | ||| |||  || |||||||| ||||     
T  39398970 caatatgctggggaaacttgaaaggaaggaagaggaactcaaggctcttgcccaaaaagttgccgaatgtaatatggaactagagtccaaagagaaagag 39398871  T
Q  351 cttgatgcagtgaa 364  Q
    ||||||||| ||||    
T  39398870 cttgatgcaatgaa 39398857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 39450421 - 39450591
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgca 166  Q
    ||||| |||||||||||||||||| |||||| |||  |||| || ||||||  ||| || |||| |||||||||  |  ||| ||| ||  |||||||||    
T  39450421 ctgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatgtaaaaggaagcagaaagtagaagaaaagagattgca 39450520  T
Q  167 gtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtta 237  Q
    ||||||| ||| ||||||||| || ||||||||||||||| || ||||||| |||| ||||||||||||||    
T  39450521 gtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaagcaagttagttgtgtta 39450591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 364
Target Start/End: Complemental strand, 39479152 - 39479023
Alignment:
Q  235 ttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaa 334  Q
    |||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||| | ||||| ||   |||||| ||||||||| | ||| ||||||    
T  39479152 ttaatgaaattcacaacaatatgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttaccgagaaagtttctgaatgtaatctggaacttaa 39479053  T
Q  335 gaccaaagaggaagatcttgatgcagtgaa 364  Q
    |||||| ||| |||| ||||||||| ||||    
T  39479052 gaccaacgagcaagagcttgatgcaatgaa 39479023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 356
Target Start/End: Original strand, 39467062 - 39467366
Alignment:
Q  61 aatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggag 160  Q
    |||||||||||||||||||||||| | ||| |||||||||   |||| || |||||| | ||| | |||||||||||||||| |  |||||| |   |||    
T  39467062 aatcagctgatgaatcattttccttgttgaagaaagaactaagattgttagaaaaattgattatggaatgcaaaaggaagagacatgtggaagagatgag 39467161  T
Q  161 attgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtg---------ttaatggaattcacaac 251  Q
    | |||||| |||  ||| ||| || ||||| || || |||||||||| | ||||||| |||| |||| ||||||         |||| | ||||||| ||    
T  39467162 actgcagtgcatgaagagagagatcgaagagtgttggaaagagcttgtaaataagaagaagcaagttggttgtgtgagaagaattaacgaaattcacgac 39467261  T
Q  252 aaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatc 351  Q
    ||||||| ||||||||||||||  |||||||||| ||||| | ||||| | | ||||||| || |||||| | ||| |||| || |||||||| |||| |    
T  39467262 aaaatgctgggaaaagttgaaagtaaggaagagggactcaaggctcttactcaaaaagttgctaaatgtaatatggaacttgagtccaaagagaaagagc 39467361  T
Q  352 ttgat 356  Q
    |||||    
T  39467362 ttgat 39467366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 39458131 - 39458273
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgca 166  Q
    ||||||||||||||| |||||||| |||||||||   ||||||| ||||||| ||| || | |||||||||| ||| | ||| ||| |   |||||||||    
T  39458131 ctgatgaatcatttttctcgctgaagaaagaactcacattggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgca 39458230  T
Q  167 gtccatccagaaagatattgaagaatgctgcaaagagcttgaa 209  Q
    ||||||  ||| ||||||||| || ||||||||||| ||||||    
T  39458231 gtccataaagagagatattgaggagtgctgcaaagatcttgaa 39458273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 39602301 - 39602398
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaaca 366  Q
    ||||| ||||||||||||||||| | ||||||||| |||| || |||||| |||||||| ||||||| ||||||||  ||| ||||||||| ||||||    
T  39602301 tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaaca 39602398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 39488334 - 39488171
Alignment:
Q  73 aatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccat 172  Q
    |||||||||||| |||||  |||||||||  ||||||| |||  || ||| || ||||||||||||| |||| ||| ||| | |||||| ||||||| ||    
T  39488334 aatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtctat 39488235  T
Q  173 ccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtt 236  Q
      ||| |||| |||| || ||||  |||||||||||| ||||||| |||  | |||||||||||    
T  39488234 aaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgtt 39488171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 39199283 - 39199182
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaa 368  Q
    ||||| ||||||||||||||||| | ||||||||| | || || |||||| |||||||| |  |||| ||||| || |||| |||| |||||||||||||    
T  39199283 tgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttactttggaatataaggccaaacagaaagagcttggtgcagtgaacaaa 39199184  T
Q  369 tt 370  Q
    ||    
T  39199183 tt 39199182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 39382014 - 39381916
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaa 367  Q
    ||||| ||||||||||||||||| | ||||||||| | || || |||||| || ||||| ||||||| ||||||||  ||| |||||| || |||||||    
T  39382014 tgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttattttggaacttaaggccaaagagatagagcttgatacaatgaacaa 39381916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 39474421 - 39474277
Alignment:
Q  73 aatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccat 172  Q
    ||||||||||||| || | ||||||||||  ||| ||| ||||||| ||| || | ||| |||||| || || | | ||||| | ||||||||| |||||    
T  39474421 aatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagattgcattccat 39474322  T
Q  173 ccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
      ||| ||||||||| || |||| | ||||||||||| |||||||    
T  39474321 aaagagagatattgaggagtgctccgaagagcttgaaaataagaa 39474277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 39199540 - 39199469
Alignment:
Q  159 agattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagt 230  Q
    ||||||||||||||  ||| ||||| |||||| ||||||||||||||| || ||||||| || | |||||||    
T  39199540 agattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagt 39199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 39369561 - 39369656
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaa 364  Q
    ||||| ||||||||||||||||| | ||||||||| |||| || |||||  |||| ||| | ||| | ||||||||  ||| ||||||||||||||    
T  39369561 tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaaattactgtggaatttatggccaaagagatagagcttgatgcagtgaa 39369656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 39479308 - 39479233
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagag 142  Q
    ||||| |||||||||||||||||| ||||||| || ||||| || ||||   |||||||||||| | |||||||||    
T  39479308 ctgataaatcattttcctcgctgaagaaagaagttaaattgatagaaaagctgtttaagaaatgtagaaggaagag 39479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 39220472 - 39220573
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtact-taagaccaaagaggaagatcttgatgcagtgaacaa 367  Q
    ||||| ||||||||||||| ||| | ||||||||| |||| || |||||  | |||||| ||| |||| |||||||| | || |||||||||||||||||    
T  39220472 tgaaaggaaggaagaggaaatcaaggctctttcccaaaaaattgctgaacttgctttgg-actgtaaggccaaagagaacgagcttgatgcagtgaacaa 39220570  T
Q  368 att 370  Q
    |||    
T  39220571 att 39220573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 39601893 - 39601942
Alignment:
Q  47 taaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaag 96  Q
    ||||| ||| ||||||||| ||||| |||||||||||||||||| |||||    
T  39601893 taaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaag 39601942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 39136293 - 39136353
Alignment:
Q  157 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39136293 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 39136353  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 39382272 - 39382200
Alignment:
Q  158 gagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagt 230  Q
    |||||| ||||||||  ||| ||||| |||||| ||||||||||||||| || ||||||| || | |||||||    
T  39382272 gagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagt 39382200  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 39427482 - 39427418
Alignment:
Q  294 actctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgc 358  Q
    |||||||||| |||| || ||||||||||| ||| ||||||||| |||||| |||| | ||||||    
T  39427482 actctttcccgaaaaattgctgaatgtactgtggaacttaagactaaagagaaagagcgtgatgc 39427418  T

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Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 33559494 - 33559848
Alignment:
Q  16 atggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaa 115  Q
    |||||||||||||| ||  | | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33559494 atggagatggtattttgtcgtcgagtacagctaaaaagccgagaaaatcagctgatgaatcattttcctcgctgatgaaagaacttcgattggtacaaaa 33559593  T
Q  116 atcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataag 215  Q
     |||||||||||||||||||||||||||||||| ||||||| ||||||||||||  |  |||||||||||||||| ||||||||||||||||||||||||    
T  33559594 ctcgtttaagaaatgcaaaaggaagaggcgagtagaaaaagagagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataag 33559693  T
Q  216 aacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactg 315  Q
    ||||| | ||| ||| || |||||| ||||||  |   |||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| ||| |||    
T  33559694 aacaatcaagtaagtcgttttaatgaaattcatgatgtaatgaagggaaaagttgaaatgacggaagaggaactcagggctctttcccaaaaggttgctg 33559793  T
Q  316 aatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||| ||| |||| ||  ||||||| |||||||||||||  ||||||||||    
T  33559794 aatgtactgtggaacttcaggtcaaagagaaagatcttgatgcgatgaacaaatt 33559848  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 16112340 - 16112516
Alignment:
Q  61 aatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggag 160  Q
    ||||||||||| |||||||||||||||||| ||| ||| || | |||||| |||||| ||||||||| |||||||||||||||  ||  ||| |   ||     
T  16112340 aatcagctgataaatcattttcctcgctgaagaatgaagttaatttggtagaaaaattgtttaagaattgcaaaaggaagaggacagaagaagagaagaa 16112439  T
Q  161 attgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtta 237  Q
    ||||||||||||  ||| ||||||||||||||| || |||||||||  | |||||||  ||| ||||| ||||||||    
T  16112440 attgcagtccataaagagagatattgaagaatgttgtaaagagcttcgaaataagaagcagcgagttatttgtgtta 16112516  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 19806654 - 19806714
Alignment:
Q  157 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  19806654 ggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaa 19806714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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