View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_high_15 (Length: 263)
Name: NF21167_high_15
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 23768240 - 23768489
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatac-----tgtattcttagttattcctaaaatttctaatttcttcaaaactaaaagacactct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23768240 |
gtaataaatcatatttctaagttctaacaagttgaaataccgcaatgtattcttagttattcctaaaatttctaatttcttcaaaactaaaagccactct |
23768339 |
T |
|
| Q |
102 |
tcttgcaagaaatttaacaaacatcagatccatcttataaacattaatcatttagnnnnnnnnnncaatatcttttacacacaaccctactttcgatagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
23768340 |
tcttgcaagaaatttaacaaacatcagatccatcttataaacattaatcatttag-tttttttttcaacatcttttacacacaaccctactttcgatagc |
23768438 |
T |
|
| Q |
202 |
acatagctaccttaaaacaatgtacatggaattttcccaacagtcattcat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
23768439 |
acatagctaccttaaaacaatgtacatggaattttcctaacaatcattcat |
23768489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 23818088 - 23818337
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatac-----tgtattcttagttattcctaaaatttctaatttcttcaaaactaaaagacactct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23818088 |
gtaataaatcatatttctaagttctaacaagttgaaataccgcaatgtattcttagttattcctaaaatttctaatttcttcaaaactaaaagccactct |
23818187 |
T |
|
| Q |
102 |
tcttgcaagaaatttaacaaacatcagatccatcttataaacattaatcatttagnnnnnnnnnncaatatcttttacacacaaccctactttcgatagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
23818188 |
tcttgcaagaaatttaacaaacatcagatccatcttataaacattaatcatttag-tttttttttcaacatcttttacacacaaccctactttcgatagc |
23818286 |
T |
|
| Q |
202 |
acatagctaccttaaaacaatgtacatggaattttcccaacagtcattcat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
23818287 |
acatagctaccttaaaacaatgtacatggaattttcctaacaatcattcat |
23818337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 23645632 - 23645493
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatact-----gtattcttagttattcctaaaatttctaatttcttcaaaactaaaagacactct |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
23645632 |
gtaataaactatatttctaagttctaacaagctgaaataccacaacgtattcttagttactcctaatttttctaatttcttcaaaactaaaagccactct |
23645533 |
T |
|
| Q |
102 |
tcttgcaagaaatttaacaa--acatcagatccatcttat |
139 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
23645532 |
tcttgcaagaaatttaacaaacacatcacatccatcttat |
23645493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 23812942 - 23813081
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatact-----gtattcttagttattcctaaaatttctaatttcttcaaaactaaaagacactct |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
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| T |
23812942 |
gtaataaactatatttctaagttctaacaagctgaaataccacaacgtattcttagttactcctaatttttctaatttcttcaaaactaaaagccactct |
23813041 |
T |
|
| Q |
102 |
tcttgcaagaaatttaacaa--acatcagatccatcttat |
139 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
23813042 |
tcttgcaagaaatttaacaaacacatcacatccatcttat |
23813081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 23779933 - 23779972
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatac |
46 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23779933 |
gtaataaattatatttctaagttctaacaagttgaaatac |
23779972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 23866886 - 23866925
Alignment:
| Q |
7 |
gtaataaatcatatttctaagttctaacaagttgaaatac |
46 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23866886 |
gtaataaattatatttctaagttctaacaagttgaaatac |
23866925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 23733097 - 23733060
Alignment:
| Q |
9 |
aataaatcatatttctaagttctaacaagttgaaatac |
46 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| |
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| T |
23733097 |
aataaattatatttctaagttataacaagttgaaatac |
23733060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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