View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_high_17 (Length: 250)
Name: NF21167_high_17
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_high_17 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 7713454 - 7713701
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
7713454 |
aggagcatcacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattg |
7713553 |
T |
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| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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| T |
7713554 |
aactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgccca |
7713653 |
T |
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| Q |
203 |
gaaaagcagggactggcccactaaggctgttggagccaaggtcgagat |
250 |
Q |
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| T |
7713654 |
gaaattcagggattggcccactaaggctgttggagccaaggtcgagat |
7713701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 7731131 - 7731373
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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| T |
7731131 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacatta |
7731230 |
T |
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| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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| T |
7731231 |
aactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7731330 |
T |
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| Q |
203 |
gaaaagcagggactggcccactaaggctgttggagccaaggtc |
245 |
Q |
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| T |
7731331 |
gaaaagtggggatcggcccactaagactgttggaaccaaggtc |
7731373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 7726971 - 7727213
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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| T |
7726971 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacatta |
7727070 |
T |
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| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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| T |
7727071 |
aactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7727170 |
T |
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| Q |
203 |
gaaaagcagggactggcccactaaggctgttggagccaaggtc |
245 |
Q |
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| T |
7727171 |
gaaaagtggggatcggcccactaagactgttggaaccaaggtc |
7727213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 7699109 - 7699356
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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||||||| |||| ||||||||||||||||||||| | |||| |||||| ||||||||| ||| || |||||||| |||||||||||||| ||||| |
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| T |
7699109 |
aggagcaccacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacatta |
7699208 |
T |
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| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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| T |
7699209 |
aactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgccta |
7699308 |
T |
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| Q |
203 |
gaaaagcagggactggcccactaaggctgttggagccaaggtcgagat |
250 |
Q |
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| T |
7699309 |
gaaaggaggggattggcccactaaggctgttggaaccaaggtctagat |
7699356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 7739289 - 7739534
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| || |
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| T |
7739289 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgtta |
7739388 |
T |
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| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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|||| ||||||||| ||||| ||||| ||||||||||||| |||||| |||||| |||||||||||||||| ||| || | || |||||||| ||| | |
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| T |
7739389 |
aactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggccta |
7739488 |
T |
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| Q |
203 |
gaaaagcagggactggcccactaaggctgttggagccaaggtcgag |
248 |
Q |
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| T |
7739489 |
ggaaagtggggatcgacccactaagactgttggaaccaaggtcgag |
7739534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 12908357 - 12908173
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
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|||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| |||| || |
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| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
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| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaac |
195 |
Q |
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|||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaac |
12908173 |
T |
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