View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_1 (Length: 997)
Name: NF21167_low_1
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 338 - 978
Target Start/End: Original strand, 42798249 - 42798887
Alignment:
| Q |
338 |
atatcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
437 |
Q |
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| T |
42798249 |
atatcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
42798346 |
T |
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| Q |
438 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
537 |
Q |
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| T |
42798347 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
42798446 |
T |
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| Q |
538 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatccatgacaggcagggaagtgtaga |
637 |
Q |
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| T |
42798447 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacaggcagggaagtgtaga |
42798546 |
T |
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| Q |
638 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagtaactggatctgttgct |
737 |
Q |
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| T |
42798547 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagtaactggatctgttgct |
42798646 |
T |
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| Q |
738 |
tttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagca |
837 |
Q |
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| T |
42798647 |
tttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagca |
42798746 |
T |
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| Q |
838 |
gtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtcttatcgagtgtattcaa |
937 |
Q |
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| T |
42798747 |
gtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtcttatcgagtgtattcaa |
42798846 |
T |
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| Q |
938 |
agacttgtagaaatggactgggaggtgaagatatgccactc |
978 |
Q |
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| T |
42798847 |
agacttgtagaaatggactgggaggtgaagatatgccactc |
42798887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 42797601 - 42797791
Alignment:
| Q |
15 |
gagaagaaacaaagggtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaacttctttg |
114 |
Q |
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| T |
42797601 |
gagaagaaacaaagggtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaacttctttg |
42797687 |
T |
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| Q |
115 |
gaagataagatgtgtcatttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaata |
214 |
Q |
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| T |
42797688 |
gaagataagatgtgtcatttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaata |
42797787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 42798152 - 42798208
Alignment:
| Q |
212 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagttgtgc |
268 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagttgtgc |
42798208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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