View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21167_low_11 (Length: 384)

Name: NF21167_low_11
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21167_low_11
NF21167_low_11
[»] chr2 (21 HSPs)
chr2 (14-370)||(39160959-39161315)
chr2 (14-370)||(39207879-39208235)
chr2 (70-359)||(39391524-39391813)
chr2 (60-364)||(39398857-39399170)
chr2 (67-237)||(39450421-39450591)
chr2 (235-364)||(39479023-39479152)
chr2 (61-356)||(39467062-39467366)
chr2 (67-209)||(39458131-39458273)
chr2 (269-366)||(39602301-39602398)
chr2 (73-236)||(39488171-39488334)
chr2 (269-370)||(39199182-39199283)
chr2 (269-367)||(39381916-39382014)
chr2 (73-217)||(39474277-39474421)
chr2 (159-230)||(39199469-39199540)
chr2 (269-364)||(39369561-39369656)
chr2 (67-142)||(39479233-39479308)
chr2 (269-370)||(39220472-39220573)
chr2 (47-96)||(39601893-39601942)
chr2 (157-217)||(39136293-39136353)
chr2 (158-230)||(39382200-39382272)
chr2 (294-358)||(39427418-39427482)
[»] chr5 (1 HSPs)
chr5 (16-370)||(33559494-33559848)
[»] chr6 (1 HSPs)
chr6 (61-237)||(16112340-16112516)
[»] chr7 (1 HSPs)
chr7 (157-217)||(19806654-19806714)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 39160959 - 39161315
Alignment:
Q  14 agatggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 113  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39160959 agatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 39161058  T
Q  114 aaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 213  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161059 aaatcgtttaagaaatgcataaggaagaggcaagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 39161158  T
Q  214 agaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161159 agaacaagctagttagttgtgttaatgaaattcacaacaaaatgcagcgaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 39161258  T
Q  314 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161259 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 39161315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 39208235 - 39207879
Alignment:
Q  14 agatggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 113  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208235 agatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaa 39208136  T
Q  114 aaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 213  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208135 aaatcgtttaagaaatgcataaggaagaggcaagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagata 39208036  T
Q  214 agaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208035 agaacaagctagttagttgtgttaatgaaattcacaacaaaatgcagcgaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttac 39207936  T
Q  314 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39207935 tgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 39207879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 70 - 359
Target Start/End: Complemental strand, 39391813 - 39391524
Alignment:
Q  70 atgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtc 169  Q
    ||||||| |||||||| |||||||| ||||||  ||||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||| |||    
T  39391813 atgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaaggaagagtcgagtagaaaaagagagattgctgtc 39391714  T
Q  170 catccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagtt 269  Q
    |||  |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||  || |||||||| ||||||||    
T  39391713 cataaagaaagatattgaagagtgctgcaaagagcttgaagataagaacaagcaagttagttgtgttaataaaattcatgacgaaatgcagagaaaagtt 39391614  T
Q  270 gaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgca 359  Q
    ||| |||||||||||||||| | | ||||||||| |||| ||  |||||||||| ||| |||| || |||||||| ||||||||||||||    
T  39391613 gaagtgaaggaagaggaactgaaggctctttcccaaaaaattgttgaatgtactgtggaacttcaggccaaagagaaagatcttgatgca 39391524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 39399170 - 39398857
Alignment:
Q  60 aaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaaggga 159  Q
    |||||||||||| |||||||||| ||||| | ||||||| || |||||||| |||||| |||||||||||||||||||||||||  ||| ||| |   ||    
T  39399170 aaatcagctgataaatcattttcatcgctcaagaaagaagttaaattggtagaaaaattgtttaagaaatgcaaaaggaagaggaaagtagaagagaaga 39399071  T
Q  160 gattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtg---------ttaatggaattcacaa 250  Q
    |||||||||||||  ||| |||||||||||| ||||| ||||| |||| | | |||||  ||| ||||| |||||         |||||| |||||||||    
T  39399070 gattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaagcagcaagttatttgtgttagaagacttaatgaaattcacaa 39398971  T
Q  251 caaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagat 350  Q
    ||| |||| ||| ||| |||||| ||||||||||||||||| | ||||| ||| ||||||| | ||||||| | ||| |||  || |||||||| ||||     
T  39398970 caatatgctggggaaacttgaaaggaaggaagaggaactcaaggctcttgcccaaaaagttgccgaatgtaatatggaactagagtccaaagagaaagag 39398871  T
Q  351 cttgatgcagtgaa 364  Q
    ||||||||| ||||    
T  39398870 cttgatgcaatgaa 39398857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 39450421 - 39450591
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgca 166  Q
    ||||| |||||||||||||||||| |||||| |||  |||| || ||||||  ||| || |||| |||||||||  |  ||| ||| ||  |||||||||    
T  39450421 ctgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatgtaaaaggaagcagaaagtagaagaaaagagattgca 39450520  T
Q  167 gtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtta 237  Q
    ||||||| ||| ||||||||| || ||||||||||||||| || ||||||| |||| ||||||||||||||    
T  39450521 gtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaagcaagttagttgtgtta 39450591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 364
Target Start/End: Complemental strand, 39479152 - 39479023
Alignment:
Q  235 ttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaa 334  Q
    |||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||| | ||||| ||   |||||| ||||||||| | ||| ||||||    
T  39479152 ttaatgaaattcacaacaatatgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttaccgagaaagtttctgaatgtaatctggaacttaa 39479053  T
Q  335 gaccaaagaggaagatcttgatgcagtgaa 364  Q
    |||||| ||| |||| ||||||||| ||||    
T  39479052 gaccaacgagcaagagcttgatgcaatgaa 39479023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 356
Target Start/End: Original strand, 39467062 - 39467366
Alignment:
Q  61 aatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggag 160  Q
    |||||||||||||||||||||||| | ||| |||||||||   |||| || |||||| | ||| | |||||||||||||||| |  |||||| |   |||    
T  39467062 aatcagctgatgaatcattttccttgttgaagaaagaactaagattgttagaaaaattgattatggaatgcaaaaggaagagacatgtggaagagatgag 39467161  T
Q  161 attgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtg---------ttaatggaattcacaac 251  Q
    | |||||| |||  ||| ||| || ||||| || || |||||||||| | ||||||| |||| |||| ||||||         |||| | ||||||| ||    
T  39467162 actgcagtgcatgaagagagagatcgaagagtgttggaaagagcttgtaaataagaagaagcaagttggttgtgtgagaagaattaacgaaattcacgac 39467261  T
Q  252 aaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatc 351  Q
    ||||||| ||||||||||||||  |||||||||| ||||| | ||||| | | ||||||| || |||||| | ||| |||| || |||||||| |||| |    
T  39467262 aaaatgctgggaaaagttgaaagtaaggaagagggactcaaggctcttactcaaaaagttgctaaatgtaatatggaacttgagtccaaagagaaagagc 39467361  T
Q  352 ttgat 356  Q
    |||||    
T  39467362 ttgat 39467366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 39458131 - 39458273
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgca 166  Q
    ||||||||||||||| |||||||| |||||||||   ||||||| ||||||| ||| || | |||||||||| ||| | ||| ||| |   |||||||||    
T  39458131 ctgatgaatcatttttctcgctgaagaaagaactcacattggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgca 39458230  T
Q  167 gtccatccagaaagatattgaagaatgctgcaaagagcttgaa 209  Q
    ||||||  ||| ||||||||| || ||||||||||| ||||||    
T  39458231 gtccataaagagagatattgaggagtgctgcaaagatcttgaa 39458273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 39602301 - 39602398
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaaca 366  Q
    ||||| ||||||||||||||||| | ||||||||| |||| || |||||| |||||||| ||||||| ||||||||  ||| ||||||||| ||||||    
T  39602301 tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaaca 39602398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 39488334 - 39488171
Alignment:
Q  73 aatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccat 172  Q
    |||||||||||| |||||  |||||||||  ||||||| |||  || ||| || ||||||||||||| |||| ||| ||| | |||||| ||||||| ||    
T  39488334 aatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtctat 39488235  T
Q  173 ccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtt 236  Q
      ||| |||| |||| || ||||  |||||||||||| ||||||| |||  | |||||||||||    
T  39488234 aaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgtt 39488171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 39199283 - 39199182
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaa 368  Q
    ||||| ||||||||||||||||| | ||||||||| | || || |||||| |||||||| |  |||| ||||| || |||| |||| |||||||||||||    
T  39199283 tgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttactttggaatataaggccaaacagaaagagcttggtgcagtgaacaaa 39199184  T
Q  369 tt 370  Q
    ||    
T  39199183 tt 39199182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 39382014 - 39381916
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaa 367  Q
    ||||| ||||||||||||||||| | ||||||||| | || || |||||| || ||||| ||||||| ||||||||  ||| |||||| || |||||||    
T  39382014 tgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttattttggaacttaaggccaaagagatagagcttgatacaatgaacaa 39381916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 39474421 - 39474277
Alignment:
Q  73 aatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccat 172  Q
    ||||||||||||| || | ||||||||||  ||| ||| ||||||| ||| || | ||| |||||| || || | | ||||| | ||||||||| |||||    
T  39474421 aatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagattgcattccat 39474322  T
Q  173 ccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
      ||| ||||||||| || |||| | ||||||||||| |||||||    
T  39474321 aaagagagatattgaggagtgctccgaagagcttgaaaataagaa 39474277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 39199540 - 39199469
Alignment:
Q  159 agattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagt 230  Q
    ||||||||||||||  ||| ||||| |||||| ||||||||||||||| || ||||||| || | |||||||    
T  39199540 agattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagt 39199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 39369561 - 39369656
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaa 364  Q
    ||||| ||||||||||||||||| | ||||||||| |||| || |||||  |||| ||| | ||| | ||||||||  ||| ||||||||||||||    
T  39369561 tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaaattactgtggaatttatggccaaagagatagagcttgatgcagtgaa 39369656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 39479308 - 39479233
Alignment:
Q  67 ctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagag 142  Q
    ||||| |||||||||||||||||| ||||||| || ||||| || ||||   |||||||||||| | |||||||||    
T  39479308 ctgataaatcattttcctcgctgaagaaagaagttaaattgatagaaaagctgtttaagaaatgtagaaggaagag 39479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 39220472 - 39220573
Alignment:
Q  269 tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtact-taagaccaaagaggaagatcttgatgcagtgaacaa 367  Q
    ||||| ||||||||||||| ||| | ||||||||| |||| || |||||  | |||||| ||| |||| |||||||| | || |||||||||||||||||    
T  39220472 tgaaaggaaggaagaggaaatcaaggctctttcccaaaaaattgctgaacttgctttgg-actgtaaggccaaagagaacgagcttgatgcagtgaacaa 39220570  T
Q  368 att 370  Q
    |||    
T  39220571 att 39220573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 39601893 - 39601942
Alignment:
Q  47 taaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaag 96  Q
    ||||| ||| ||||||||| ||||| |||||||||||||||||| |||||    
T  39601893 taaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaag 39601942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 39136293 - 39136353
Alignment:
Q  157 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39136293 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 39136353  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 39382272 - 39382200
Alignment:
Q  158 gagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagt 230  Q
    |||||| ||||||||  ||| ||||| |||||| ||||||||||||||| || ||||||| || | |||||||    
T  39382272 gagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaagaaccaagttagt 39382200  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 39427482 - 39427418
Alignment:
Q  294 actctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgc 358  Q
    |||||||||| |||| || ||||||||||| ||| ||||||||| |||||| |||| | ||||||    
T  39427482 actctttcccgaaaaattgctgaatgtactgtggaacttaagactaaagagaaagagcgtgatgc 39427418  T

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Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 33559494 - 33559848
Alignment:
Q  16 atggagatggtattctgctgacaagtacaactaaaaagccgagcaaatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaa 115  Q
    |||||||||||||| ||  | | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33559494 atggagatggtattttgtcgtcgagtacagctaaaaagccgagaaaatcagctgatgaatcattttcctcgctgatgaaagaacttcgattggtacaaaa 33559593  T
Q  116 atcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataag 215  Q
     |||||||||||||||||||||||||||||||| ||||||| ||||||||||||  |  |||||||||||||||| ||||||||||||||||||||||||    
T  33559594 ctcgtttaagaaatgcaaaaggaagaggcgagtagaaaaagagagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataag 33559693  T
Q  216 aacaagctagttagttgtgttaatggaattcacaacaaaatgcagggaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactg 315  Q
    ||||| | ||| ||| || |||||| ||||||  |   |||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| ||| |||    
T  33559694 aacaatcaagtaagtcgttttaatgaaattcatgatgtaatgaagggaaaagttgaaatgacggaagaggaactcagggctctttcccaaaaggttgctg 33559793  T
Q  316 aatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaatt 370  Q
    |||||||| ||| |||| ||  ||||||| |||||||||||||  ||||||||||    
T  33559794 aatgtactgtggaacttcaggtcaaagagaaagatcttgatgcgatgaacaaatt 33559848  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 16112340 - 16112516
Alignment:
Q  61 aatcagctgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcaaaaggaagaggcgagtggaaaaagggag 160  Q
    ||||||||||| |||||||||||||||||| ||| ||| || | |||||| |||||| ||||||||| |||||||||||||||  ||  ||| |   ||     
T  16112340 aatcagctgataaatcattttcctcgctgaagaatgaagttaatttggtagaaaaattgtttaagaattgcaaaaggaagaggacagaagaagagaagaa 16112439  T
Q  161 attgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaacaagctagttagttgtgtta 237  Q
    ||||||||||||  ||| ||||||||||||||| || |||||||||  | |||||||  ||| ||||| ||||||||    
T  16112440 attgcagtccataaagagagatattgaagaatgttgtaaagagcttcgaaataagaagcagcgagttatttgtgtta 16112516  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 19806654 - 19806714
Alignment:
Q  157 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 217  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  19806654 ggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaa 19806714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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