View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21167_low_12 (Length: 368)
Name: NF21167_low_12
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 45648417 - 45648748
Alignment:
| Q |
21 |
taagaagatacttaattcctgcttcaaccactaaatattgttgattaagaaacttatggatcacatcaaccacaacaaaagaaatcaatgtaatttaatg |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45648417 |
taaggagatacttaattcctgcttcaaccactaactattgttgaataagtaacttatggttcacatcaaccacaacaaaagaaatcaatgtaatttaatg |
45648516 |
T |
|
| Q |
121 |
agtgcagaaggcaacaaatgaatgtgaaagaaaaaggagtgtgaagaataaagttaaatcatgatctaattttattatatatattattaccaccaaatgg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45648517 |
agtgcagaaggcaacaaatgaatgtgaaagaaaaaggagtgtgaagaataaagttaaatcatgatctaattttattatatatattattaccaccaaatgg |
45648616 |
T |
|
| Q |
221 |
ctgaaacagtctcccagaatttgcagagtgaatgccttgtggttttcttcgacgctcattatggcctgcaagtcgtttacggcaactgcgcttaccatca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45648617 |
ctgaaacagtctcccagaatttgcagagtgaatgccttgtggttttcttcgacgctcattatggcctgcaagtcgtttacggcaactgcgcttaccatca |
45648716 |
T |
|
| Q |
321 |
tcaaattcagacagcaaatgaaacctgaataa |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45648717 |
tcaaattcagacagcaaatgaaacctgaataa |
45648748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 25608663 - 25608568
Alignment:
| Q |
256 |
cttgtggttttcttcgacgctcattatggcctgcaagtcgtttacggcaactgcgcttaccatcatcaaattcagacagcaaatgaaacctgaata |
351 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25608663 |
cttgtggctttctacgacgttcattatggcctgcaagacgtttacgacagctacgcttaccatcatcaaattcagccagcaaatgaaacctgaata |
25608568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University