View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21167_low_14 (Length: 310)

Name: NF21167_low_14
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21167_low_14
NF21167_low_14
[»] chr4 (1 HSPs)
chr4 (14-310)||(45648131-45648427)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 45648131 - 45648427
Alignment:
Q  14 aggatcttcttacgtatcaaatcatacatttatattaatatcagatgactaaaaaagcataggaaactggcttcagataatcaattattataagagtcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45648131 aggatcttcttacgtatcaaatcatacatttatattaatatcagatgactaaaaaagcataggaaactggcttcagataatcaattattataagagtcaa 45648230  T
Q  114 caatgcttcatctttttcccctttctaacgagggatggaaaatccatgtcagcgccattttacatggtacaacactaaggttagtaacttagttaaatga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45648231 caatgcttcatctttttcccctttctaacgagggatggaaaatccatgtcagcggcattttacatggtacaacactaaggttagtaacttagttaaatga 45648330  T
Q  214 atgacaacttggaatttaagtaactacaattaattatatttagacgtcattctgtaagaaaacagatagaagtttatgattgatcataaggagatac 310  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45648331 atgacaacttggaatttaagtaactacaattaaatatatttagacgtcattctgtaagaaaacagatagaagtttatgattgatcataaggagatac 45648427  T

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