View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_16 (Length: 291)
Name: NF21167_low_16
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 38111426 - 38111300
Alignment:
| Q |
18 |
tgaatgaaacgcgtcttcgttgaatcaaatctttattcctaatcaaaaaccaaatcaacataaattgtgggctttaaaatacaaattgaggataaccata |
117 |
Q |
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| T |
38111426 |
tgaatgaaacgcgtcttcgttgaatcaaatctttattcctaaacaaaaaccaaataaacctaaattgtgagctttaaaatacaaatagaggataaccata |
38111327 |
T |
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| Q |
118 |
tttattcctaatcatatttatttttga |
144 |
Q |
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| T |
38111326 |
tttattcctaatcatatttatttttga |
38111300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 38111230 - 38111170
Alignment:
| Q |
217 |
aaaattactaaaccaacgaaatatgacacgaccgccaccttcactccactaacggtgccct |
277 |
Q |
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| T |
38111230 |
aaaattactaaaccaatgaaatatgacacgaccgccacctacactccactaacggtgccct |
38111170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38117384 - 38117307
Alignment:
| Q |
20 |
aatgaaacgcgtcttcgttgaatcaaatctttattcctaatca-aaaaccaaatcaacataaattgtgggctttaaaa |
96 |
Q |
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| T |
38117384 |
aatgaaacgcgtctttgttgaatcaaatctttattcctaatcaaaaaaccaaatacacataaattgtgatctttaaaa |
38117307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 9995300 - 9995393
Alignment:
| Q |
19 |
gaatgaaacgcgtcttcgttgaatcaaatctttattcctaatcaaaaaccaaatcaacataaattgtgggctttaaaatacaaattgaggataa |
112 |
Q |
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| T |
9995300 |
gaatgtaatgcgtcttcgtcgaatcaaatctttattccttattaaaaaccacatacacataaactgtgagttctagaatacaaacagaggataa |
9995393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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