View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21167_low_18 (Length: 262)
Name: NF21167_low_18
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 45020822 - 45020589
Alignment:
| Q |
13 |
agcataggaggttgtcgaacagttgagaaattgagagggaaaattgaagtagagaagtgatttcatacgataggttttccccaattgaattgaattgaat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45020822 |
agcatcggaggttgtcgaacagttgagaaattgagagggaaaattgaagtagagaagtgatttcatacgataggttttccccaattgaattgaattgaat |
45020723 |
T |
|
| Q |
113 |
gcaaggtttttggttctttcttcctatgaaaccctaaatggacgcgaaggatattcttggtttgcacaaaaactcatttccatcttctcttgataataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45020722 |
gcaaggtttttggttctttcttcctatgaaaccctaaatggacgcgaaggatattcttggtttgcacaaaaactcatttccatcttctcttgataataaa |
45020623 |
T |
|
| Q |
213 |
aaatctcgacctcccaaagaatctcagagaaaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45020622 |
aaatctcgacctcccaaagaatctcagagaaaac |
45020589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University