View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_21 (Length: 246)
Name: NF21167_low_21
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 7699435 - 7699660
Alignment:
| Q |
5 |
taagatatgggaggtcgccaaactccgctggaagcgtacctgaaagaccccagccacggctgatggtgacaactgtgactcggccaggatatggtttgcc |
104 |
Q |
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| T |
7699435 |
taagataagggaggttgccaaactccgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccaggataaggtctgcc |
7699534 |
T |
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| Q |
105 |
gcacccgatgaagtcccaatcacaacattctgtattgttgtcccagtcgccaagacggccgtttggaccaccgaaatggtctctgattttgaggagggcg |
204 |
Q |
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| T |
7699535 |
gcaaccgacgaagctccagtcacaacattcggtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcg |
7699634 |
T |
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| Q |
205 |
gctttgtcgtcggcgttgcagaagaa |
230 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7699635 |
gctttgtcgtcggcgttgcagaagaa |
7699660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 7713780 - 7714005
Alignment:
| Q |
5 |
taagatatgggaggtcgccaaactccgctggaagcgtacctgaaagaccccagccacggctgatggtgacaactgtgactcggccaggatatggtttgcc |
104 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||| |
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| T |
7713780 |
taagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccaggataaggtctgcc |
7713879 |
T |
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| Q |
105 |
gcacccgatgaagtcccaatcacaacattctgtattgttgtcccagtcgccaagacggccgtttggaccaccgaaatggtctctgattttgaggagggcg |
204 |
Q |
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| T |
7713880 |
gcaacctacgaagttccagtcacaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcg |
7713979 |
T |
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| Q |
205 |
gctttgtcgtcggcgttgcagaagaa |
230 |
Q |
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| T |
7713980 |
gctttgtcgtcggcgttgcagaagaa |
7714005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7727293 - 7727525
Alignment:
| Q |
1 |
aagttaagatatgggaggtcgccaaactccgctggaagcgtacctgaaagaccccagccacggctgatggtgacaactgtgactcggccaggatatggtt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| |||| |
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| T |
7727293 |
aagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtt |
7727392 |
T |
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| Q |
101 |
tgccgcacccgatgaagtcccaatc---acaacattctgtattgttgtcccagtcgccaagacggccgtttggaccaccgaaatggtctctgattttgag |
197 |
Q |
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| T |
7727393 |
tgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgag |
7727492 |
T |
|
| Q |
198 |
gagggcggctttgtcgtcggcgttgcagaagaa |
230 |
Q |
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||| | ||||||||| | ||| |||||| |||| |
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| T |
7727493 |
gagagtggctttgtcattggcattgcaggagaa |
7727525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7739611 - 7739843
Alignment:
| Q |
1 |
aagttaagatatgggaggtcgccaaactccgctggaagcgtacctgaaagaccccagccacggctgatggtgacaactgtgactcggccaggatatggtt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| |||| |
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| T |
7739611 |
aagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtt |
7739710 |
T |
|
| Q |
101 |
tgccgcacccgatgaagtcccaatc---acaacattctgtattgttgtcccagtcgccaagacggccgtttggaccaccgaaatggtctctgattttgag |
197 |
Q |
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| T |
7739711 |
taccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgag |
7739810 |
T |
|
| Q |
198 |
gagggcggctttgtcgtcggcgttgcagaagaa |
230 |
Q |
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||||| ||||||||| | |||||||||| |||| |
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| T |
7739811 |
gagggtggctttgtcattggcgttgcaggagaa |
7739843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7731453 - 7731685
Alignment:
| Q |
1 |
aagttaagatatgggaggtcgccaaactccgctggaagcgtacctgaaagaccccagccacggctgatggtgacaactgtgactcggccaggatatggtt |
100 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| |||| |
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| T |
7731453 |
aagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtt |
7731552 |
T |
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| Q |
101 |
tgccgcacccgatgaagtcccaatc---acaacattctgtattgttgtcccagtcgccaagacggccgtttggaccaccgaaatggtctctgattttgag |
197 |
Q |
| |
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| || ||||||| |||| ||| || |||||| |||||| ||||||||| ||| ||| |||||||| || || ||||||||||||||||||||||| |
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| T |
7731553 |
taccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgag |
7731652 |
T |
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| Q |
198 |
gagggcggctttgtcgtcggcgttgcagaagaa |
230 |
Q |
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||||| ||||||||| | |||||||||| |||| |
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| T |
7731653 |
gagggtggctttgtcattggcgttgcaggagaa |
7731685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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