View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_27 (Length: 213)
Name: NF21167_low_27
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 8194760 - 8194645
Alignment:
| Q |
2 |
caatcttacaaattagtcttaaacctgatagatacacatttaactttgttttaaatgcttgtactattagtttagattttcatgagggtgtgaatattta |
101 |
Q |
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| T |
8194760 |
caattttaaaaattggtcttaaacctgataaattcacatttaactttgttttaaaggcttgtactagtgctttagattttcatgaaggtgtgaatattta |
8194661 |
T |
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| Q |
102 |
caaagatattgttttt |
117 |
Q |
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| T |
8194660 |
taaagatatagttttt |
8194645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 8194843 - 8194931
Alignment:
| Q |
112 |
gtttttgatttggtggaaatgggtgtggatttggagaagagggtttatgtgtttgcatgaattaatgagttttaaggcagtgattgttgt |
201 |
Q |
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| T |
8194843 |
gtttttgatttggaggaaatgggtgtggatttggagaagagggtttatgtatttgcatgaatttatgag-tttaaggtagtgattgttgt |
8194931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 8231031 - 8230940
Alignment:
| Q |
112 |
gtttttgatttggtggaaatgggtgtggatttggagaagagggtttatgtgtttgcatgaattaatgagttttaaggcagtgattgttgtgat |
204 |
Q |
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| T |
8231031 |
gtttttgatttggaggaaatgggtgtggatttggagaagagggtttatatttttgcatgaattaataag-tttaaggtagtaattgttgtgat |
8230940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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