View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_5 (Length: 465)
Name: NF21167_low_5
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 10124992 - 10125444
Alignment:
| Q |
1 |
tcctgaaattttaaactgaattaactatgtcaaatagaggctataacgcggtgatttatgtgtgccactaatgtctatataattgaacagattttgcgtt |
100 |
Q |
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| T |
10124992 |
tcctgaaattttaaactgcattaactatgtcaaatagaggctataacacagtgatttatgtgtgccactaatgtctatataattgaacagattttgcgtt |
10125091 |
T |
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| Q |
101 |
atagcatgctactgtatcaaggatattaccatgtcaaatagagtctataacgcggtgaaatttaaacaaatttgttatcgttacgcagtacatagttttg |
200 |
Q |
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| T |
10125092 |
atagcatgctactgtatcaaggatattaccatgtcaaatagagtctataacgcggtgaaatttaaacaaatttgttatcgttacgcagtacatagttttg |
10125191 |
T |
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| Q |
201 |
ttaaatagcagttataacgacacgatggcattgtattgtatcgacaatattacatactaactagttacccgtgtctatgttgcagcctttggagttgaca |
300 |
Q |
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| T |
10125192 |
ttaaatagcagttataacgacacgatggcattgtattgtatcgacgatattacatactaactagttacccgtgtctatgttgcagcctttggagttgaca |
10125291 |
T |
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| Q |
301 |
tgttacataccatcggctatatatactcaagacaagcagcacaagaactagggaaaaaggccctttatcttggagttccatttctggccgaatgggttcg |
400 |
Q |
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| T |
10125292 |
tgttacataccatcggctatatatactcaagacaagcagcacaagaactagggaaaaaggccctttatcttggagttccatttctggccgaatgggttcg |
10125391 |
T |
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| Q |
401 |
taataaaggacatttttggaaatcacagttaacagctgctaaaggtatgatga |
453 |
Q |
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| T |
10125392 |
taataaaggacatttttggaaatcacagttaacagctgctaaaggtataatga |
10125444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 255 - 453
Target Start/End: Original strand, 10118648 - 10118847
Alignment:
| Q |
255 |
tactaactagttacccgtgtctatgtt-gcagcctttggagttgacatgttacataccatcggctatatatactcaagacaagcagcacaagaactaggg |
353 |
Q |
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| T |
10118648 |
tactaactagttatccgtgtctctgtttgcagagtttggagttgacatgttacataccacaggctatatatattcaaaccaagcagcacaagaactaggg |
10118747 |
T |
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| Q |
354 |
aaaaaggccctttatcttggagttccatttctggccgaatgggttcgtaataaaggacatttttggaaatcacagttaacagctgctaaaggtatgatga |
453 |
Q |
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| T |
10118748 |
aaaaatgccctttatctgggagtgccatttctggcagaatgggtttgcagtaagggacattattggaaatcacagtttacagctgctaaaggtataatga |
10118847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 10118419 - 10118494
Alignment:
| Q |
53 |
gatttatgtgtgccactaatgtctatataattgaacagattttgcgttatagcatgctactgtatcaaggatatta |
128 |
Q |
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|||||||||| || |||| ||||||||||| |||| ||||||| |||||||||| || |||||||||||||||| |
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| T |
10118419 |
gatttatgtgcgcaactagcgtctatataatcaaacatattttgctttatagcatgttattgtatcaaggatatta |
10118494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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