View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_6 (Length: 443)
Name: NF21167_low_6
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 27442501 - 27442081
Alignment:
| Q |
9 |
aggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcgacgacagccgacaagacaatgtcatcaaccttgctga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27442501 |
aggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcgacgacagccaacaagacaatgtcatcaaccttgctga |
27442402 |
T |
|
| Q |
109 |
atggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442401 |
atggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaaga |
27442302 |
T |
|
| Q |
209 |
caatgctgtgaaaaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatg |
308 |
Q |
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|| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442301 |
cactgctgtgaaaaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatg |
27442202 |
T |
|
| Q |
309 |
ccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442201 |
ccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccat |
27442102 |
T |
|
| Q |
409 |
tcaggaatattaggtgcttgg |
429 |
Q |
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||||||| ||||||||||||| |
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| T |
27442101 |
tcaggaaaattaggtgcttgg |
27442081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 125 - 389
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
125 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
224 |
Q |
| |
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||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
|
| Q |
225 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
324 |
Q |
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|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
|
| Q |
325 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
389 |
Q |
| |
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|| |||||| ||||||||| ||| ||| | ||| ||||||| |||| | |||||||||||||| |
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| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 131 - 389
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
131 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
230 |
Q |
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||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
|
| Q |
231 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
330 |
Q |
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|| ||| || ||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || || |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
331 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
389 |
Q |
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|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
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| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 125 - 389
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
125 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
224 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
|
| Q |
225 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
324 |
Q |
| |
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||||| || ||| || |||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
325 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
389 |
Q |
| |
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|| |||||| ||| ||||| ||| ||| | | ||||||||| ||| |||||||||| ||||| |
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| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 11837933 - 11837984
Alignment:
| Q |
9 |
aggtagacgtatacagctatggtgtgattctaatggggatgataactggaaa |
60 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
11837933 |
aggtagacgtatacagctatggtgtgattcttatggagatgataaccggaaa |
11837984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 11850616 - 11850666
Alignment:
| Q |
9 |
aggtagacgtatacagctatggtgtgattctaatggggatgataactggaa |
59 |
Q |
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|||||||||||||||||||||| |||||||| |||| ||||||||| |||| |
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| T |
11850616 |
aggtagacgtatacagctatggcgtgattcttatggagatgataaccggaa |
11850666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 11855903 - 11855850
Alignment:
| Q |
12 |
tagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagag |
65 |
Q |
| |
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||||||| ||||||||||| |||||||| |||| ||||||||| ||||| |||| |
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| T |
11855903 |
tagacgtgtacagctatggcgtgattcttatggagatgataaccggaaagagag |
11855850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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