View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21167_low_9 (Length: 391)
Name: NF21167_low_9
Description: NF21167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21167_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 34956191 - 34955845
Alignment:
| Q |
8 |
agagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaaga |
107 |
Q |
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| T |
34956191 |
agagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaaga |
34956092 |
T |
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| Q |
108 |
tcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnn |
207 |
Q |
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| T |
34956091 |
tcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaacccttaggtcaaacacaaaaaa |
34955992 |
T |
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| Q |
208 |
ntttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaattttttctaacactcaattaatcatcattac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34955991 |
atttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatgggaattttttctaacactcaattaatcatcattac |
34955892 |
T |
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| Q |
308 |
catcttaatgttcataggtggtgaagtctttacatcattggtaggac |
354 |
Q |
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| T |
34955891 |
catcttaatgttcataggtggtgaagtctttacatcattggtaggac |
34955845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 56 - 354
Target Start/End: Complemental strand, 34974605 - 34974307
Alignment:
| Q |
56 |
caaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaact |
155 |
Q |
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| T |
34974605 |
caaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaact |
34974506 |
T |
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| Q |
156 |
ttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagca |
255 |
Q |
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|||||||||||||||||||||| ||| ||||| |||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34974505 |
ttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcacatccatttcagccaccacagtttcaagca |
34974406 |
T |
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| Q |
256 |
tggtcacggttgaaatggaaattttttctaacactcaattaatcatcattaccatcttaatgttcataggtggtgaagtctttacatcattggtaggac |
354 |
Q |
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|| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
34974405 |
tgtccacggttgaaatgcaaaatttttctaaccctcaattaatcatcattaccatcttaatgttcataggtggtgaagtttttacatcaatggtaggac |
34974307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 80 - 340
Target Start/End: Complemental strand, 35035308 - 35035045
Alignment:
| Q |
80 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
179 |
Q |
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|||||| ||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
|
| Q |
180 |
cttaaacccttaggtcaaaca---cnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaa |
276 |
Q |
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|| || || ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035208 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccacagtttcaagcatgtccacggttgaaatggaat |
35035109 |
T |
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| Q |
277 |
ttttttctaacactcaattaatcatcattaccatcttaatgttcataggtggtgaagtctttac |
340 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35035108 |
ttttttctaaccctcaattaatcatcattaccatcttaatgttcataggtggtgaaatctttac |
35035045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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