View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_high_1 (Length: 590)
Name: NF21168_high_1
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 559
Target Start/End: Complemental strand, 18243757 - 18243223
Alignment:
| Q |
17 |
aatatgtctgaaacattctttgttactatggaatgtattgctaatctgtttagaataatatgaaaaataataatcaaannnnnnnnnnaaactcggtatt |
116 |
Q |
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| T |
18243757 |
aatatgtctgaaacattctttgttactatggaatgtatggctaatctgtttagaataatatgaaaaatgataatca--ttttttttttaaactcgatatt |
18243660 |
T |
|
| Q |
117 |
caaggggatcagttccaccgcccacttgcaaagccctatttaaagtcggaacaaagttttgtatagacttacccccaaaattggcattaggggaatcaaa |
216 |
Q |
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|||| ||||||||||| ||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
18243659 |
caagaggatcagttccgccgtccacttgtggagccccatttaaagtcggaaaaaagttttgtatagacttaccctcaaaattggcataaggggaatcaaa |
18243560 |
T |
|
| Q |
217 |
cccaaaatatactaggttacaaaagatctcaaatttcaagatctcaaatcaaccactaagccaaccctaaatagatcaaacggttataaaagatcattag |
316 |
Q |
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| T |
18243559 |
cccgaaacatactaggttacaaaagatctcaaatttcaagatctcaagtcaaccactaggccaaccctaaatagatcaaatggttataaaagatcattag |
18243460 |
T |
|
| Q |
317 |
ttgagatgctaaaattatttaatatattttcttttccaaccatgnnnnnnnnnaaatgatcgaatgttattaatcgaaggtctcaccattctcataactt |
416 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||| ||| ||||| |||||||||||||| |
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| T |
18243459 |
ttgagatgctaaaattatttaatacattttcttttccaaccatatttttttataaatga-caaatgttattaatcaaagatctcaacattctcataactt |
18243361 |
T |
|
| Q |
417 |
cagccttaacacattcattcaaccaccaagtcaatcttataacctctagatgtctccaatagatataggagatataaaccatttgaggggtgatgatgaa |
516 |
Q |
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| T |
18243360 |
cacccttaacacattcattcaaccaccaagtca-----ataacctctagatttgtccaatagatagaggagatataaaccatttggggggtgataatgaa |
18243266 |
T |
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| Q |
517 |
aaaagtgacaaggttaaattaacttaaaaaagataggcaaaaa |
559 |
Q |
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| T |
18243265 |
aaaagtgacaaggttaaattaacttaaaaaagataggcaaaaa |
18243223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 34571634 - 34571593
Alignment:
| Q |
251 |
ttcaagatctcaaatcaaccactaagccaaccctaaatagat |
292 |
Q |
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| T |
34571634 |
ttcaaaatctcaagtcaaccactaagccaaccccaaatagat |
34571593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 42963567 - 42963531
Alignment:
| Q |
246 |
caaatttcaagatctcaaatcaaccactaagccaacc |
282 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
42963567 |
caaacttcaagatctcaaatcaaccactatgccaacc |
42963531 |
T |
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