View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_high_9 (Length: 303)
Name: NF21168_high_9
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 2708886 - 2708600
Alignment:
| Q |
1 |
tggggtgtttcattaaggaaaaactgggaccgttgtgctgcttaagttcccctagtaacttgtaacgacgttttacatgtctttcatcaaatagctaact |
100 |
Q |
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| T |
2708886 |
tggggtgtatcattaaggaaaaactgggaccggtgtgctacttaagttcccctagtaacttgtaacgacgttttacatgtctttcatcaaatagctaact |
2708787 |
T |
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| Q |
101 |
ttgttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatc |
200 |
Q |
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| T |
2708786 |
ttgttggttactttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatc |
2708687 |
T |
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| Q |
201 |
ttgccgttcaagatatgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtat |
287 |
Q |
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| T |
2708686 |
tcgccgttcaagatatgcctccgatgaggttgggtttgtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtat |
2708600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 2702835 - 2702663
Alignment:
| Q |
113 |
ttgcagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaag |
212 |
Q |
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| T |
2702835 |
ttgcagaaaatcgactgtgttcacagcaatgctgttatggagataatgcgaggtattcgatatcagttgacggaactcataactggcctcgctgttcaag |
2702736 |
T |
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| Q |
213 |
atatgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
285 |
Q |
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| T |
2702735 |
acatggctccgatgagcttgggtttgtctcatagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 288
Target Start/End: Original strand, 26713695 - 26713867
Alignment:
| Q |
116 |
cagaaaatcaaatgttttcacaacaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagata |
215 |
Q |
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||||||||| ||||| |||||||||| |||||||||||| | ||| ||||| | ||||||| |||| ||||| || | | ||| || |||||||| | |
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| T |
26713695 |
cagaaaatcgaatgtgttcacaacaatgctgttatggagttgatgagaggtgtcagatatcaattgaatgaactcatagcaggtctagctgttcaagaca |
26713794 |
T |
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| Q |
216 |
tgcctcctatgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatt |
288 |
Q |
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| T |
26713795 |
tggcccctatgagcttgggtttgtctcatagcttatccagatacaggctgaagtttagcgccgacaaggtatt |
26713867 |
T |
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