View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21168_low_11 (Length: 301)

Name: NF21168_low_11
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21168_low_11
NF21168_low_11
[»] chr8 (5 HSPs)
chr8 (11-259)||(14223102-14223353)
chr8 (98-282)||(14229600-14229784)
chr8 (58-282)||(14227293-14227512)
chr8 (235-284)||(31586217-31586266)
chr8 (241-282)||(29519278-29519319)
[»] chr5 (2 HSPs)
chr5 (235-284)||(28136273-28136322)
chr5 (235-263)||(22817199-22817227)
[»] chr4 (4 HSPs)
chr4 (235-285)||(45615373-45615423)
chr4 (232-278)||(47665812-47665858)
chr4 (231-282)||(39439270-39439321)
chr4 (236-284)||(7148382-7148430)
[»] scaffold0128 (1 HSPs)
scaffold0128 (230-283)||(32168-32221)
[»] chr1 (3 HSPs)
chr1 (246-283)||(27835486-27835523)
chr1 (231-286)||(4785035-4785090)
chr1 (232-282)||(44363999-44364049)
[»] chr3 (4 HSPs)
chr3 (248-283)||(1921862-1921897)
chr3 (240-282)||(13635634-13635676)
chr3 (50-95)||(17355786-17355831)
chr3 (250-283)||(45382825-45382858)
[»] chr7 (2 HSPs)
chr7 (247-283)||(27012178-27012214)
chr7 (42-94)||(41006851-41006903)
[»] chr6 (2 HSPs)
chr6 (240-284)||(31811988-31812032)
chr6 (238-278)||(32125247-32125287)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 14223353 - 14223102
Alignment:
Q  11 cataggcaatttgtgaagagtaacccacggcggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttccgctatcgacaacaatt 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14223353 cataggcaatttgtgaagagtaaaccacggcggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttctgctatcgacaacaatt 14223254  T
Q  111 ttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaagtgaaagacaccc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||    
T  14223253 ttgggcaatcaaattgtgatctaagaaaacctagacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaaatgaaaggcatcc 14223154  T
Q  211 aacaaccaacaaaat---ttatattatctctatagcactgacacttctgatc 259  Q
    ||||| || ||||||   | |||| ||||||||||||| |||||||||||||    
T  14223153 aacaatcatcaaaatgaataatatcatctctatagcaccgacacttctgatc 14223102  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 98 - 282
Target Start/End: Complemental strand, 14229784 - 14229600
Alignment:
Q  98 atcgacaacaattttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaa 197  Q
    ||||| |||| ||| ||| |||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14229784 atcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaa 14229685  T
Q  198 gtgaaagacacccaacaaccaacaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 282  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14229684 gtgaaagatacccaacaaccatcaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 14227512 - 14227293
Alignment:
Q  58 gcaatggaatgtttaaatggcgtatttttggccttccgctatcgacaacaattttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatca 157  Q
    ||||||| ||||||| ||| || ||||||||||||| || ||| | |||| || | ||||||||||||||||||||||||||||||||||||||||||||    
T  14227512 gcaatggcatgtttatatgacggatttttggccttcagccatcaaaaacacttatcggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatca 14227413  T
Q  158 aactacaaagacacattgtcctaataaaggagaaagtcaagtgaaagacacccaacaaccaacaaaatttatattatctctatagcactgacacttctga 257  Q
    |||||||||||||||||||| |||||||| || |||||||||||||| || ||| ||| || ||||||  |||     |||||||||| ||||||||| |    
T  14227412 aactacaaagacacattgtcttaataaagaagtaagtcaagtgaaaggcatccagcaatcatcaaaatgaata-----tctatagcaccgacacttctaa 14227318  T
Q  258 tcgaaggcatgtctggtgtccgaca 282  Q
    |||||| ||||||| ||||||||||    
T  14227317 tcgaagtcatgtctagtgtccgaca 14227293  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 31586217 - 31586266
Alignment:
Q  235 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 284  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggtgtccaacatg 31586266  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 29519319 - 29519278
Alignment:
Q  241 agcactgacacttctgatcgaaggcatgtctggtgtccgaca 282  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  29519319 agcaccgacacttctaatcaaaggcatgtctggtgtccgaca 29519278  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 28136322 - 28136273
Alignment:
Q  235 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 284  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  28136322 ctctatagcactgacacttctgatcgaagacgtgtctggtgtctgacatg 28136273  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 22817227 - 22817199
Alignment:
Q  235 ctctatagcactgacacttctgatcgaag 263  Q
    |||||||||||||||||||||||||||||    
T  22817227 ctctatagcactgacacttctgatcgaag 22817199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 45615373 - 45615423
Alignment:
Q  235 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatga 285  Q
    |||||||||||  | ||||| ||||||||||||||||||||||||||||||    
T  45615373 ctctatagcacataaacttccgatcgaaggcatgtctggtgtccgacatga 45615423  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 47665812 - 47665858
Alignment:
Q  232 tatctctatagcactgacacttctgatcgaaggcatgtctggtgtcc 278  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||    
T  47665812 tatctctatagcactgacacttctggtggaaggcatgtccggtgtcc 47665858  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 39439321 - 39439270
Alignment:
Q  231 ttatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 282  Q
    |||||||||||||||| |||||||||||||||| | | ||||||||| ||||    
T  39439321 ttatctctatagcacttacacttctgatcgaagacgtctctggtgtctgaca 39439270  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 7148382 - 7148430
Alignment:
Q  236 tctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 284  Q
    |||||||||| ||||||| ||||  |||||||||| |||||||||||||    
T  7148382 tctatagcaccgacacttttgatgcaaggcatgtccggtgtccgacatg 7148430  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 32168 - 32221
Alignment:
Q  230 attatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacat 283  Q
    ||||||||||||||||   ||||||| |||||||| ||||||||||||||||||    
T  32168 attatctctatagcaccagcacttctaatcgaaggtatgtctggtgtccgacat 32221  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 27835523 - 27835486
Alignment:
Q  246 tgacacttctgatcgaaggcatgtctggtgtccgacat 283  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27835523 tgacacttctgattgaaggcatgtctggtgtccgacat 27835486  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 4785090 - 4785035
Alignment:
Q  231 ttatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatgat 286  Q
    |||||| | |||||| ||||||||||||||||| | |||||||||||| |||||||    
T  4785090 ttatctttgtagcaccgacacttctgatcgaagacgtgtctggtgtccaacatgat 4785035  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 44364049 - 44363999
Alignment:
Q  232 tatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 282  Q
    ||||||||||||| |||||||||| ||| ||| | ||||||||||||||||    
T  44364049 tatctctatagcattgacacttctaatcaaagccgtgtctggtgtccgaca 44363999  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Complemental strand, 1921897 - 1921862
Alignment:
Q  248 acacttctgatcgaaggcatgtctggtgtccgacat 283  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1921897 acacttctgatcgaaggcatgtcaggtgtccgacat 1921862  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 13635676 - 13635634
Alignment:
Q  240 tagcactgacacttctgatcgaaggcatgtctggtgtccgaca 282  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||    
T  13635676 tagcactgacacttctgatagaaggcgtgtctggtgtctgaca 13635634  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17355786 - 17355831
Alignment:
Q  50 catagtccgcaatggaatgtttaaatggcgtatttttggccttccg 95  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  17355786 cataggccgcaatggcatgtttatatggcgaatttttggccttccg 17355831  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 45382858 - 45382825
Alignment:
Q  250 acttctgatcgaaggcatgtctggtgtccgacat 283  Q
    ||||||||||||||||||||| ||||||||||||    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacat 45382825  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 27012214 - 27012178
Alignment:
Q  247 gacacttctgatcgaaggcatgtctggtgtccgacat 283  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  27012214 gacacctctgatcgaaggcatatctggtgtccgacat 27012178  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41006851 - 41006903
Alignment:
Q  42 ggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttcc 94  Q
    ||||||||||||| || |||||| ||||||| |||||||| || |||||||||    
T  41006851 ggtggtgccataggccacaatggcatgtttatatggcgtacttctggccttcc 41006903  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 31812032 - 31811988
Alignment:
Q  240 tagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 284  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||||    
T  31812032 tagcactgacacctctgatcaaaggcatgtccagtgtccgacatg 31811988  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 32125287 - 32125247
Alignment:
Q  238 tatagcactgacacttctgatcgaaggcatgtctggtgtcc 278  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  32125287 tatagcaccgacacttctgatctaagacatgtctggtgtcc 32125247  T

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