View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_15 (Length: 237)
Name: NF21168_low_15
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 2905397 - 2905567
Alignment:
| Q |
54 |
tgttattttggatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagccatctccaggtattt |
153 |
Q |
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| T |
2905397 |
tgttattttgcatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagccatctccaggtattt |
2905496 |
T |
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| Q |
154 |
ttcttatctcttatataatatttagcattagaagctatgaagcacaacactgacacatatgtcaaacatga |
224 |
Q |
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| T |
2905497 |
ttcttatctcttatataatatttagcattagaagctatgaagcacaacactgacacatatgtcaaacatga |
2905567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 2893932 - 2894051
Alignment:
| Q |
49 |
atagttgttattttggatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagccatctccagg |
148 |
Q |
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| T |
2893932 |
atagttgttatcttgcttgcagaggctgtacccaaaaagattcttgaactgatgaatgttgaaaatctgacaagggaaaaggtggccagccatctccagg |
2894031 |
T |
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| Q |
149 |
ta-tttttcttatctcttat |
167 |
Q |
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| T |
2894032 |
taccttttctaatctcttat |
2894051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 2889363 - 2889490
Alignment:
| Q |
40 |
tttctcattatagttgttattttggatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagcc |
139 |
Q |
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| T |
2889363 |
tttctcatgatagttgttatcttacttgc-gaggctgtaccgaaaaagattcttgaactgatgaatgttgaaaatctgacaagggagaaagttgccagcc |
2889461 |
T |
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| Q |
140 |
atctccaggta-tttttcttatctcttat |
167 |
Q |
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| T |
2889462 |
atatccaggtactttttcttatctcttat |
2889490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 48869719 - 48869568
Alignment:
| Q |
17 |
aagtttttctatacataactgtgtttctcattatagttgttattttggatgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaaccct |
116 |
Q |
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| T |
48869719 |
aagtttttcgatactaaactgtgtttcttattttagttgttattttgcttgcagatgctataccaaaaaagattcttgaattgatgaatgttgaaaatct |
48869620 |
T |
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| Q |
117 |
tacaagggagaatgtggccagccatctccaggtatttttc-ttatctcttat |
167 |
Q |
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| T |
48869619 |
tacaagggataatgtggccagccatctccaggtgtttttctttatctcttat |
48869568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 49060398 - 49060307
Alignment:
| Q |
66 |
tgcagaggctgtgccaaaaaagatacttgacttgatggatgatgaaacccttacaagggagaatgtggccagccatctccaggtatttttct |
157 |
Q |
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| T |
49060398 |
tgcagaggctgtacccaaaaaaattcttgatatgatgaatgtcgaaaatattacaagggagaacgtggcaagccatctccaggtatttttct |
49060307 |
T |
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