View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_16 (Length: 211)
Name: NF21168_low_16
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 25865691 - 25865871
Alignment:
| Q |
16 |
aaagggtctatttggtatcagaaaatgttttcacaaaccgaaaacatgaaatgaaagtgttggtcttatactacaaatatcacttacttgggccaatgct |
115 |
Q |
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| T |
25865691 |
aaagggtctatttggtatcagaaaatgttttcaaaaaccgaaaacatgaaatgaaagtgttggtcttatactacaaatatcacttacttgggccaatgct |
25865790 |
T |
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| Q |
116 |
ggaagtgttggtcttccagtactttcaacaaatccactgcagtcacctattgagaacacatcttgtaccgaaggaacacga |
196 |
Q |
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| T |
25865791 |
ggaagtgttggtcttccagtactttcaacaaatccactgcagtcacctattgagaacacatcttgtaccgaaggaacacga |
25865871 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 30217439 - 30217536
Alignment:
| Q |
99 |
ttacttgggccaatgctggaagtgttggtcttccagtactttcaacaaatccactgcagtcacctattgagaacacatcttgtaccgaaggaacacga |
196 |
Q |
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|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
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| T |
30217439 |
ttacttgggcaagagctggaagtgttggttttccagtactttcaacaaatccactgcagtcacctattgagaagatatcttgtactgaaggaacacga |
30217536 |
T |
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