View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_2 (Length: 588)
Name: NF21168_low_2
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 37063370 - 37062815
Alignment:
| Q |
14 |
atatatcatatgacataggagacgattttgctttactaatcaataatggtaaaaaagtatcattttnnnnnnncaatccaaaataatttctaattggtga |
113 |
Q |
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| T |
37063370 |
atatatcatatgacatagaagacgattttgctttactaatcaataatggtaaaaaagtgtcattttaaaaaaacaatccaaaataatttctaattggtga |
37063271 |
T |
|
| Q |
114 |
gtgtttcttttgacattcattaacactcttcaacttcacgaaacctatatcattacgtgagttagctttcatggtttggaaacacaagtgtccaatctta |
213 |
Q |
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| T |
37063270 |
gtgtttcttttgacattcattaacactcttcaacttcacgaaacctatatcattacgtgagttagctttcatggtttggaaacacaagtgtccaatctta |
37063171 |
T |
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| Q |
214 |
ggcgtgaaataaaggttaaccccaactcaccacctttgcataaggatacnnnnnnnntaatacacataattaatttttaattaacacacttaattgaaca |
313 |
Q |
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| T |
37063170 |
ggcgtgaaataaaggttaaccccaactcaccatctttgcataaggatacaaaaaaaataatacacataattaatttttaattaaaacacttaattgaaca |
37063071 |
T |
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| Q |
314 |
tgtgtaattataaaatgggttttagtcatttagtttggtggtgtgacatagaagctaaagggtggaagtacctaaaaagtgcttaaaaggttgaaactac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37063070 |
tgtgtaattataaaatgggttttagtcatttagtttggtggtgtgacatagaagctaaagggtggaagtacctaaaaagtgcttaaaaggttgaaactac |
37062971 |
T |
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| Q |
414 |
aaatcaaagaagaaaataagcaggtagaagtaggggggttgggatattagattaggagttaggagtgagaagtggtgatgcagttatgtgttatttattt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062970 |
aaatcaaagaagaaaataagcaggtagaagtaggggggttgggatattagattaggagttaggagtgagaagtggtgatgcagttatgtgttatttattt |
37062871 |
T |
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| Q |
514 |
aaggagcaaaggcataaagccaaattaatatctatacaattaaccaataactgtcc |
569 |
Q |
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| T |
37062870 |
aaggagcaaaggcataaagccaaattaatatctatacaattaaccaataactgtcc |
37062815 |
T |
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