View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_4 (Length: 493)
Name: NF21168_low_4
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 316 - 487
Target Start/End: Original strand, 6090115 - 6090286
Alignment:
| Q |
316 |
gagagtctgaacaaagagttcagattattgtttctttggaacaaggaaacaaaacaaagtgtgaactatgaaaggatgaaagtgtagacatagtagggtt |
415 |
Q |
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| T |
6090115 |
gagagtctgaacaaagagttcagattattgtttctttggaacaaggaaacaaaacaaagtgtgaactatgaaaggatgaaagtgtagacatagtagggtt |
6090214 |
T |
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| Q |
416 |
tctagtgaccggatagttaccggttatagccggttatatctttgttctgtgtgttttgcagatattcttgga |
487 |
Q |
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| T |
6090215 |
tctagtgaccggatagttaccggttatagccggtgatatctttattctgtgtgttttgcagatatttttgga |
6090286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 143 - 287
Target Start/End: Original strand, 6089942 - 6090086
Alignment:
| Q |
143 |
ctttttatagatgaagctggattgaagtgatggaagtgacnnnnnnngaaagaaagaaggtataataattaatggtgatgttaagtttattattatgatg |
242 |
Q |
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| T |
6089942 |
ctttttatagatgaagctggattgaagtgatggaagtgacaaaaaaagaaagaaagaaggtataataattaatggtgatgttaagtttattattatgatg |
6090041 |
T |
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| Q |
243 |
acagaaaaaatttgatacgtcaaagtgattgagaatttgatgatg |
287 |
Q |
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| T |
6090042 |
acagcaaaaatttgatacgtcaaagtgattgagaatttgatgatg |
6090086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 4512351 - 4512424
Alignment:
| Q |
143 |
ctttttatagatgaagctggattgaagtgatggaagtgacnnnnnnngaaagaaagaaggtataataattaatg |
216 |
Q |
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| T |
4512351 |
ctttttatagatgaagctagattgaagtgatggaagtgacaaaaaaagaaagaaagaaggtataataattaatg |
4512424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 6089821 - 6089855
Alignment:
| Q |
22 |
atggtaaccttcaaaaccctcatcactagccatag |
56 |
Q |
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| T |
6089821 |
atggtaaccttcaaaaccctcatcactagccatag |
6089855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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