View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21168_low_5 (Length: 448)
Name: NF21168_low_5
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 14150511 - 14150086
Alignment:
| Q |
1 |
ataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14150511 |
ataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttcct |
14150412 |
T |
|
| Q |
101 |
tcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14150411 |
tcttggtggctccaatagcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgtc |
14150312 |
T |
|
| Q |
201 |
ctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtcata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14150311 |
ctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaacttctcagtcata |
14150212 |
T |
|
| Q |
301 |
gtatcaataatgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatcga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14150211 |
gtatcaataatgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatcga |
14150112 |
T |
|
| Q |
401 |
tggagtgagatcccaagacaagacca |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14150111 |
tggagtgagatcccaagacaagacca |
14150086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 13610043 - 13609735
Alignment:
| Q |
1 |
ataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttcct |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
13610043 |
ataaagtccccagcatgaattgttcccatttctacagattgaccaccattctccaaaccaagttgtttcactatgtattcttttgcacggccaatttcct |
13609944 |
T |
|
| Q |
101 |
tcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtc |
200 |
Q |
| |
|
|||| ||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
13609943 |
tctttgtggctccattggcaaccgagcaaatttcctttacagtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgtc |
13609844 |
T |
|
| Q |
201 |
ctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtcata |
300 |
Q |
| |
|
|| |||||| || ||||| ||||||||| | |||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||| |
|
|
| T |
13609843 |
ttgatttcttcccctactagacttctgatcttgaacccgcttatatatctcattagctcggtccttaatgatcggaaccagtcccaacctctcagccata |
13609744 |
T |
|
| Q |
301 |
gtatcaata |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
13609743 |
gtatcaata |
13609735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 14075100 - 14074792
Alignment:
| Q |
1 |
ataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttcct |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||| | |||||||||||||||||| ||| | |||||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
14075100 |
ataaagtccccaatatgaattattcccatttcaatagattgaccaccattctctaaacccagttgtttcactatgtattcttttgcgcggacaatttcct |
14075001 |
T |
|
| Q |
101 |
tcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtc |
200 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
14075000 |
tcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatgcttc |
14074901 |
T |
|
| Q |
201 |
ctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtcata |
300 |
Q |
| |
|
||| |||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
14074900 |
ctgatttcttcccttactagacttctgatcttcaacccgcttatatatctcattagctcggtccttaatggtgggaaccagtcccaacttctcagccata |
14074801 |
T |
|
| Q |
301 |
gtatcaata |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
14074800 |
atatcaata |
14074792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 426
Target Start/End: Complemental strand, 13609604 - 13609489
Alignment:
| Q |
311 |
tgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatcgatggagtgaga |
410 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||||| | |||||||||||||||||| || | |||||||||||||| |||||||| || |
|
|
| T |
13609604 |
tgaggagagggttattgggaccaccgacacgaacggcatcattattgccggattcgttagcaaaggttcgccattcggaggtttcatcaatggagtgtga |
13609505 |
T |
|
| Q |
411 |
tcccaagacaagacca |
426 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
13609504 |
ttccaagacgagacca |
13609489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 14074623 - 14074561
Alignment:
| Q |
364 |
tcgttagcaaaggttagcaactcggaggtttcatcgatggagtgagatcccaagacaagacca |
426 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14074623 |
tcgttagagaaggtttgccactcggaggtttcatcgatggagtgagatcccaagacaagacca |
14074561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 134 - 265
Target Start/End: Original strand, 36012655 - 36012786
Alignment:
| Q |
134 |
cctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtcctggtttcttgccttactatacttctgatttgc |
233 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || | ||| ||||||||| | | |
|
|
| T |
36012655 |
cctttacggtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgtcctgatttcttcccctgctagacttctgatcttc |
36012754 |
T |
|
| Q |
234 |
aaccagcttatatatctcaatagctcggtcct |
265 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |
|
|
| T |
36012755 |
aacccgcttatatatctcattagctcggtcct |
36012786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 36012428 - 36012561
Alignment:
| Q |
1 |
ataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttcct |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
36012428 |
ataaagtccccagcatgaattgttcccatttcaacagattgaccgccattctccaaacccagttgtttcactatgtattcttttgcgcggccaatttcct |
36012527 |
T |
|
| Q |
101 |
tcttggtggctccaatggcaatcgaggaaatttc |
134 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
36012528 |
tcttggtggctccattggcaattgagcaaatttc |
36012561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 36014354 - 36014467
Alignment:
| Q |
313 |
aggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatcgatggagtgagatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| | |||||||| || |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36014354 |
aggagagggttactgggaccaccgacacgaacgggatcgttatcaccggattcgttggcgaaggttcgccactcggaggtttcatcgatggagtgagatt |
36014453 |
T |
|
| Q |
413 |
ccaagacaagacca |
426 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
36014454 |
ccaagacgagacca |
36014467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 22090700 - 22090788
Alignment:
| Q |
46 |
ccattctccaaagctagttgtttcatgatgtattgttttgcgcggccaatttccttcttggtggctccaatggcaatcgaggaaatttc |
134 |
Q |
| |
|
||||| |||||| | |||||||||| ||||| | |||||| ||||||||||||||||| ||||| ||| |||||| ||| ||||||| |
|
|
| T |
22090700 |
ccattatccaaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaacagagcaaatttc |
22090788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 22090900 - 22091012
Alignment:
| Q |
154 |
tcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaa |
253 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||| || || || || |||||| | ||||| |||| || | | ||||| ||||||||||||| |
|
|
| T |
22090900 |
tcttcttgtcggcaagcgatgtagatacaagcagccaacaaagcatcttgatttcttcctctactagacttttggtcttcaaccctcttatatatctcat |
22090999 |
T |
|
| Q |
254 |
tagctcggtcctt |
266 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
22091000 |
ttgctcgatcctt |
22091012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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