View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_6 (Length: 438)
Name: NF21168_low_6
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 38 - 419
Target Start/End: Original strand, 15452797 - 15453178
Alignment:
| Q |
38 |
aattcttctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgctacgatttcaaacca |
137 |
Q |
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| T |
15452797 |
aattcttctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgctacgatttcaaacca |
15452896 |
T |
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| Q |
138 |
caaacaccataaattaattaacaactatatgnnnnnnnnnnnnnncatttaagccagtcattttcatgaaataatcaatttaaccaacattccaatgaga |
237 |
Q |
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| T |
15452897 |
caaacaccataaattaatcaacaactatatgttttttccttttttcatttaagccagtcattttcatgaaataatcaatttaaccaacattccaatgaga |
15452996 |
T |
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| Q |
238 |
ctgaaaaagctaataatttaacacatttaagttaaactattcttctgaataaatcatttttatgattaatctcatataaacaatcacaaataaaaagata |
337 |
Q |
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| T |
15452997 |
ctgaaaaagttaataatttaacacatttaagttaaactattcttctgaataaatcatttttatgattaatctcatataaacaatcacaaataaaaagata |
15453096 |
T |
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| Q |
338 |
aattatgtcgccgcatacctgtcgcagcagcagccgtcaacgtttgaatatcgccggaagacctcacattcacagcagagct |
419 |
Q |
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| T |
15453097 |
aattatgtcgccgcatacctgtcgcagcagcagccgtcaacgtttgaatatcgccggaagacctcacattcacagcagagct |
15453178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 46577379 - 46577460
Alignment:
| Q |
44 |
tctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgctac |
125 |
Q |
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||||||||||||| || || |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
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| T |
46577379 |
tctccacaggaatcactgctgcaatattccaaacttctttcaatgccctcgctttcaatgttgcagccccacgcaaagctac |
46577460 |
T |
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